Variant report

Variant	rs9878286
Chromosome Location	chr3:115789995-115789996
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:115782312..115784390-chr3:115787119..115790072,2	K562	blood:
2	chr3:115784918..115786597-chr3:115787841..115790560,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11918028	0.80[CEU][hapmap];0.86[JPT][hapmap]
rs12485818	0.81[CEU][hapmap];0.82[CHB][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.87[ASN][1000 genomes]
rs12495426	0.81[CEU][hapmap];0.82[CHB][hapmap];0.93[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.87[ASN][1000 genomes]
rs13065579	0.81[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs13100598	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1920382	0.84[CEU][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.81[ASN][1000 genomes]
rs1920383	0.84[CEU][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1920384	0.80[CEU][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap]
rs1920385	0.87[ASN][1000 genomes]
rs1920388	0.86[CHD][hapmap]
rs2141626	0.81[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2141627	0.86[ASN][1000 genomes]
rs2141629	0.81[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4240164	0.86[CHD][hapmap];0.81[JPT][hapmap]
rs4240166	0.80[JPT][hapmap]
rs4286426	0.86[CHD][hapmap];0.86[JPT][hapmap]
rs4398428	0.84[CEU][hapmap];0.86[CHD][hapmap]
rs4399891	0.86[JPT][hapmap]
rs4426677	0.81[JPT][hapmap]
rs4518124	0.86[CHD][hapmap]
rs4611819	0.86[CHD][hapmap]
rs4831218	0.83[CHD][hapmap]
rs4831219	0.86[CHD][hapmap]
rs4831221	0.81[JPT][hapmap]
rs4831222	0.81[JPT][hapmap]
rs6438296	0.81[CEU][hapmap];0.86[CHD][hapmap]
rs6776244	0.82[CHB][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6787687	0.86[CHD][hapmap]
rs6787872	0.84[CEU][hapmap];0.86[CHD][hapmap];0.82[GIH][hapmap];0.93[JPT][hapmap]
rs6807809	0.80[CEU][hapmap]
rs7610371	0.81[CEU][hapmap];0.82[CHB][hapmap];0.93[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.86[ASN][1000 genomes]
rs7625191	0.86[CHD][hapmap]
rs9289034	0.86[CHD][hapmap]
rs9289040	0.81[CEU][hapmap];0.82[CHB][hapmap];0.90[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.87[ASN][1000 genomes]
rs9813153	0.81[JPT][hapmap]
rs9833365	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9840787	0.82[CHD][hapmap];0.81[JPT][hapmap]
rs9845521	0.84[CEU][hapmap]
rs9848298	0.81[CEU][hapmap];0.86[CHD][hapmap];0.82[GIH][hapmap];0.93[JPT][hapmap]
rs9863087	0.84[CEU][hapmap];0.86[CHD][hapmap];0.93[JPT][hapmap]
rs9869887	0.86[CHD][hapmap]
rs9872913	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931948	chr3:114884574-115802562	Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv2760762	chr3:115476222-115807650	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv829685	chr3:115643521-115812913	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1012260	chr3:115680931-115935968	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv2756413	chr3:115721898-115908480	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv1001538	chr3:115746561-115791116	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	esv2751975	chr3:115766285-115902901	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:115766200-115794200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr3:115780400-115830000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:115780600-115803800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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