Variant report

Variant	rs9879525
Chromosome Location	chr3:59755258-59755259
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs9818923	1.00[AFR][1000 genomes]
rs9823066	1.00[AFR][1000 genomes]
rs9851823	1.00[YRI][hapmap]
rs9878244	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014601	chr3:59666609-59888166	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59741600-59757800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr3:59745200-59757000	Weak transcription	Dnd41	blood
3	chr3:59746800-59757400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr3:59747000-59757200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr3:59747200-59757000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr3:59750200-59756800	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr3:59750200-59757600	Weak transcription	Esophagus	oesophagus
8	chr3:59752600-59756600	Weak transcription	Osteobl	bone
9	chr3:59752600-59757000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr3:59752600-59757200	Weak transcription	HSMMtube	muscle
11	chr3:59752800-59756400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:59752800-59756600	Weak transcription	NHDF-Ad	bronchial
13	chr3:59752800-59757000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr3:59752800-59757200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:59752800-59757200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:59753400-59757200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr3:59754400-59757200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr3:59754800-59755400	Bivalent Enhancer	Thymus	Thymus
19	chr3:59755000-59756000	Enhancers	Fetal Brain Male	brain
20	chr3:59755000-59756600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr3:59755000-59756600	Strong transcription	Primary T cells from cord blood	blood
22	chr3:59755200-59755400	Enhancers	Primary hematopoietic stem cells	blood
23	chr3:59755200-59755600	Weak transcription	Fetal Thymus	thymus

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