Variant report

Variant	rs9879689
Chromosome Location	chr3:159660753-159660754
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13326330	1.00[AMR][1000 genomes]
rs9865035	1.00[AMR][1000 genomes]
rs9990321	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997776	chr3:159585097-159668421	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv829769	chr3:159606913-159805282	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159654400-159664400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:159654600-159664800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:159654600-159665200	Weak transcription	HSMM	muscle
4	chr3:159656800-159664400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr3:159658600-159672200	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr3:159659800-159664800	Weak transcription	NH-A	brain
7	chr3:159660000-159662200	Weak transcription	NHDF-Ad	bronchial
8	chr3:159660000-159664200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:159660000-159664400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:159660000-159664400	Weak transcription	Osteobl	bone
11	chr3:159660000-159665800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr3:159660200-159662200	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr3:159660200-159664800	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr3:159660400-159662600	Weak transcription	Primary hematopoietic stem cells	blood
15	chr3:159660600-159663800	Weak transcription	NHLF	lung
16	chr3:159660600-159665800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr3:159660600-159666000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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