The 2.0 version of rSNPBase

Variant report

Variant rs9879729
Chromosome Location chr3:45685311-45685312
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:118 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:45642200-45705800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
2 chr3:45668200-45685400 Weak transcription Brain Angular Gyrus brain
3 chr3:45672400-45688800 Weak transcription Right Atrium heart
4 chr3:45673200-45688400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
5 chr3:45673600-45688400 Weak transcription Primary T helper naive cells from peripheral blood blood
6 chr3:45674000-45691400 Weak transcription Primary T killer naive cells fromperipheralblood blood
7 chr3:45677000-45686800 Weak transcription Brain Germinal Matrix brain
8 chr3:45677800-45686200 Weak transcription Aorta Aorta
9 chr3:45678400-45686000 Weak transcription Duodenum Smooth Muscle Duodenum
10 chr3:45678600-45687600 Weak transcription Fetal Brain Male brain
11 chr3:45678600-45689200 Enhancers Liver Liver
12 chr3:45678800-45685400 Weak transcription iPS-18 Cell Line embryonic stem cell
13 chr3:45678800-45686400 Weak transcription Primary T helper naive cells fromperipheralblood blood
14 chr3:45678800-45701400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
15 chr3:45680200-45686800 Enhancers Stomach Mucosa stomach
16 chr3:45680200-45687200 Genic enhancers Primary hematopoietic stem cells short term culture blood
17 chr3:45680400-45685400 Enhancers Pancreas Pancrea
18 chr3:45680600-45686200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
19 chr3:45680800-45685400 Enhancers Hela-S3 cervix
20 chr3:45681600-45688000 Genic enhancers Fetal Lung lung
21 chr3:45681800-45689400 Strong transcription GM12878-XiMat blood
22 chr3:45681800-45689600 Enhancers Skeletal Muscle Female skeletal muscle
23 chr3:45682000-45687200 Weak transcription Primary neutrophils fromperipheralblood blood
24 chr3:45682000-45690200 Strong transcription Primary B cells from peripheral blood blood
25 chr3:45682200-45685400 Strong transcription Primary mononuclear cells fromperipheralblood Blood
26 chr3:45682200-45687800 Enhancers Fetal Heart heart
27 chr3:45682400-45686800 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
28 chr3:45682400-45687000 Strong transcription Primary T helper cells fromperipheralblood blood
29 chr3:45682600-45685400 Weak transcription H9 Cell Line embryonic stem cell
30 chr3:45682600-45686000 Weak transcription Small Intestine intestine
31 chr3:45682600-45686200 Weak transcription Rectal Mucosa Donor 29 rectum
32 chr3:45682600-45687800 Weak transcription Fetal Intestine Large intestine
33 chr3:45682800-45685600 Weak transcription Placenta Amnion Placenta Amnion
34 chr3:45682800-45687800 Weak transcription Rectal Mucosa Donor 31 rectum
35 chr3:45683000-45686200 Enhancers NHDF-Ad bronchial
36 chr3:45683000-45689600 Strong transcription Primary T regulatory cells fromperipheralblood blood
37 chr3:45683200-45686800 Enhancers Colon Smooth Muscle Colon
38 chr3:45683400-45685600 Weak transcription Primary T cells from cord blood blood
39 chr3:45683400-45685800 Enhancers NH-A brain
40 chr3:45683400-45686200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
41 chr3:45683400-45687000 Enhancers Cortex derived primary cultured neurospheres brain
42 chr3:45683400-45687000 Enhancers NHLF lung
43 chr3:45683600-45687000 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
44 chr3:45683800-45685400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
45 chr3:45683800-45685800 Enhancers Rectal Smooth Muscle rectum
46 chr3:45683800-45687800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
47 chr3:45683800-45688000 Genic enhancers Fetal Muscle Leg muscle
48 chr3:45684000-45685600 Enhancers Brain Cingulate Gyrus brain
49 chr3:45684000-45686600 Enhancers HSMM muscle
50 chr3:45684200-45685400 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived

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Last update: Aug 31, 2015