Variant report

Variant	rs9880086
Chromosome Location	chr3:59695214-59695215
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1463399	0.89[EUR][1000 genomes]
rs1823229	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2084378	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6446078	0.87[EUR][1000 genomes]
rs6803290	0.94[EUR][1000 genomes]
rs7371972	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7616008	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs997346	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834706	chr3:59538151-59736014	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Genic enhancers	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv998711	chr3:59542279-59704503	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1014601	chr3:59666609-59888166	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59691400-59695800	Weak transcription	Fetal Brain Male	brain
2	chr3:59692200-59695600	Weak transcription	Thymus	Thymus
3	chr3:59692400-59697000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr3:59694600-59695400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr3:59694800-59695400	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr3:59694800-59696400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr3:59694800-59696400	Enhancers	Fetal Thymus	thymus
8	chr3:59694800-59696600	Enhancers	Primary hematopoietic stem cells	blood
9	chr3:59694800-59697200	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr3:59695000-59695600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr3:59695000-59695800	Enhancers	Primary T cells from cord blood	blood
12	chr3:59695000-59696600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr3:59695000-59696800	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr3:59695200-59696000	Enhancers	Fetal Heart	heart
15	chr3:59695200-59696000	Flanking Active TSS	Dnd41	blood
16	chr3:59695200-59696600	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr3:59695200-59696800	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr3:59695200-59696800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr3:59695200-59696800	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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