Variant report

Variant	rs9880342
Chromosome Location	chr3:105070234-105070235
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs13065937	0.87[CHB][hapmap]
rs13070790	0.90[CHB][hapmap]
rs13075944	0.82[CHB][hapmap]
rs13079517	0.86[CHB][hapmap]
rs13085657	0.86[CHB][hapmap]
rs13092913	0.86[CHB][hapmap]
rs13095216	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13095274	0.83[ASN][1000 genomes]
rs1438544	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1438546	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1438549	0.91[CHB][hapmap]
rs1438551	0.87[CHB][hapmap]
rs1438553	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1438554	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16851175	0.86[CHB][hapmap]
rs2399046	0.91[CHB][hapmap]
rs4589964	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4894926	0.87[CHB][hapmap]
rs55934921	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62262153	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6437579	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6437582	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6437583	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6437584	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6773531	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6793758	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6797065	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6797259	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6804633	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7611398	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7620029	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7620713	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7626665	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7634168	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7635959	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9288801	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs976530	0.86[CHB][hapmap]
rs9852729	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9869867	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9883403	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525071	chr3:105004853-105409321	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105068000-105072200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr3:105068000-105072400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:105068000-105072400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:105068600-105070400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:105068600-105070400	Enhancers	HSMM	muscle
6	chr3:105068600-105070600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr3:105068600-105071400	Enhancers	NHDF-Ad	bronchial
8	chr3:105068600-105072400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr3:105068600-105072400	Enhancers	NHEK	skin
10	chr3:105068600-105074600	Enhancers	HMEC	breast
11	chr3:105069000-105072400	Weak transcription	HSMMtube	muscle
12	chr3:105069400-105071400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr3:105069800-105072200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr3:105069800-105072400	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr3:105069800-105072400	Weak transcription	Psoas Muscle	Psoas
16	chr3:105070000-105070800	Enhancers	Osteobl	bone
17	chr3:105070000-105071000	Enhancers	NHLF	lung
18	chr3:105070000-105071200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr3:105070000-105071400	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr3:105070000-105072200	Enhancers	HUVEC	blood vessel
21	chr3:105070200-105071600	Weak transcription	NH-A	brain
22	chr3:105070200-105072400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr3:105070200-105072400	Weak transcription	Aorta	Aorta

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