Variant report

Variant	rs9881500
Chromosome Location	chr3:105311572-105311573
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10511245	0.81[EUR][1000 genomes]
rs1157	0.83[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap]
rs17190251	0.82[EUR][1000 genomes]
rs62262973	0.81[EUR][1000 genomes]
rs62262974	0.81[EUR][1000 genomes]
rs62262977	0.81[EUR][1000 genomes]
rs62262978	0.80[EUR][1000 genomes]
rs62262979	0.80[EUR][1000 genomes]
rs62262980	0.82[EUR][1000 genomes]
rs62262981	0.82[EUR][1000 genomes]
rs62262982	0.82[EUR][1000 genomes]
rs62262983	0.82[EUR][1000 genomes]
rs62262984	0.82[EUR][1000 genomes]
rs62262985	0.82[EUR][1000 genomes]
rs62262986	0.80[EUR][1000 genomes]
rs62262987	0.82[EUR][1000 genomes]
rs62262988	0.82[EUR][1000 genomes]
rs62262989	0.81[EUR][1000 genomes]
rs72989999	0.81[EUR][1000 genomes]
rs72991816	0.82[EUR][1000 genomes]
rs72991818	0.82[EUR][1000 genomes]
rs72991822	0.82[EUR][1000 genomes]
rs9288812	0.81[EUR][1000 genomes]
rs9849713	0.82[EUR][1000 genomes]
rs9850355	0.82[EUR][1000 genomes]
rs9850716	0.81[EUR][1000 genomes]
rs9850791	0.82[EUR][1000 genomes]
rs9854039	0.81[EUR][1000 genomes]
rs9854708	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525071	chr3:105004853-105409321	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv534224	chr3:105141696-105404293	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv829651	chr3:105203424-105402136	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv460811	chr3:105212993-105316769	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv591240	chr3:105212993-105316769	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
6	nsv1012669	chr3:105290140-105321201	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats	miRNA target site	n/a	inside rSNPs	n/a
7	nsv877305	chr3:105298379-105362282	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2763727	chr3:105299778-105364508	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1002164	chr3:105300233-105351011	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv528578	chr3:105300908-105343015	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
11	nsv591241	chr3:105300908-105353145	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105272200-105312800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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