The 2.0 version of rSNPBase

Variant report

Variant rs9882792
Chromosome Location chr3:189774456-189774457
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:53 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:189749400-189774600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
2 chr3:189766400-189791200 Weak transcription Fetal Muscle Trunk muscle
3 chr3:189767200-189776000 Weak transcription Fetal Stomach stomach
4 chr3:189767400-189778600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
5 chr3:189767800-189774600 Weak transcription Colon Smooth Muscle Colon
6 chr3:189769800-189776200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
7 chr3:189769800-189781200 Weak transcription iPS-20b Cell Line embryonic stem cell
8 chr3:189769800-189782800 Weak transcription ES-WA7 Cell Line embryonic stem cell
9 chr3:189770000-189774600 Weak transcription H1 Cell Line embryonic stem cell
10 chr3:189770000-189774600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
11 chr3:189770000-189774600 Weak transcription Cortex derived primary cultured neurospheres brain
12 chr3:189770200-189775200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
13 chr3:189770200-189776000 Weak transcription Fetal Kidney kidney
14 chr3:189770200-189776200 Weak transcription Ovary ovary
15 chr3:189770800-189776400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
16 chr3:189771400-189776000 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
17 chr3:189772600-189776400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
18 chr3:189772600-189776400 Weak transcription H9 Cell Line embryonic stem cell
19 chr3:189772600-189776400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
20 chr3:189772600-189776400 Weak transcription HSMMtube muscle
21 chr3:189772800-189774600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
22 chr3:189772800-189776000 Weak transcription HUVEC blood vessel
23 chr3:189772800-189776000 Weak transcription NH-A brain
24 chr3:189772800-189776000 Weak transcription Osteobl bone
25 chr3:189772800-189776200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
26 chr3:189772800-189776200 Weak transcription Muscle Satellite Cultured Cells --
27 chr3:189772800-189776400 Weak transcription NHDF-Ad bronchial
28 chr3:189772800-189776600 Weak transcription Breast Myoepithelial Primary Cells Breast
29 chr3:189773000-189774600 Weak transcription HUES48 Cell Line embryonic stem cell
30 chr3:189773000-189774600 Weak transcription iPS-18 Cell Line embryonic stem cell
31 chr3:189773000-189776000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
32 chr3:189773000-189776200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
33 chr3:189773000-189776400 Weak transcription HUES6 Cell Line embryonic stem cell
34 chr3:189773000-189776400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
35 chr3:189773000-189776400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
36 chr3:189773000-189776400 Weak transcription HSMM muscle
37 chr3:189773000-189776600 Weak transcription NHLF lung
38 chr3:189773000-189776800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
39 chr3:189773000-189781000 Weak transcription NHEK skin
40 chr3:189773000-189782200 Weak transcription HMEC breast
41 chr3:189773200-189774600 Weak transcription iPS-15b Cell Line embryonic stem cell
42 chr3:189773200-189774800 Weak transcription HUES64 Cell Line embryonic stem cell
43 chr3:189773200-189776400 Weak transcription ES-I3 Cell Line embryonic stem cell
44 chr3:189773600-189775600 Enhancers Fetal Muscle Leg muscle
45 chr3:189773600-189776000 Weak transcription A549 lung
46 chr3:189773800-189776800 Enhancers Fetal Heart heart
47 chr3:189773800-189783000 Enhancers Fetal Adrenal Gland Adrenal Gland
48 chr3:189774000-189774800 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
49 chr3:189774000-189775000 Enhancers Rectal Smooth Muscle rectum
50 chr3:189774000-189776400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast

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Last update: Aug 31, 2015