Variant report

Variant	rs9883323
Chromosome Location	chr3:56643610-56643611
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11130524	0.84[AFR][1000 genomes]
rs13316272	1.00[AMR][1000 genomes]
rs13320990	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13326525	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28493474	0.84[AFR][1000 genomes]
rs28605592	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28846202	0.84[AFR][1000 genomes]
rs9817151	1.00[AMR][1000 genomes]
rs9821740	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9824415	1.00[AMR][1000 genomes]
rs9827937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9846575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9848723	0.84[AFR][1000 genomes]
rs9853548	0.97[AFR][1000 genomes]
rs9861624	1.00[AMR][1000 genomes]
rs9864263	1.00[AMR][1000 genomes]
rs9867688	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9873327	1.00[AFR][1000 genomes]
rs9877962	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9985426	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876817	chr3:56517253-56649282	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv460557	chr3:56594735-56661320	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv590362	chr3:56594735-56661320	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56592400-56644800	Weak transcription	Small Intestine	intestine
2	chr3:56592800-56644600	Weak transcription	Fetal Heart	heart
3	chr3:56603200-56650400	Weak transcription	K562	blood
4	chr3:56606200-56650200	Weak transcription	Colonic Mucosa	Colon
5	chr3:56607800-56650200	Weak transcription	Psoas Muscle	Psoas
6	chr3:56625200-56650400	Weak transcription	NHEK	skin
7	chr3:56625200-56653400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr3:56626400-56656200	Weak transcription	Stomach Mucosa	stomach
9	chr3:56628600-56649600	Weak transcription	HepG2	liver
10	chr3:56629000-56647400	Weak transcription	HUVEC	blood vessel
11	chr3:56629000-56648000	Weak transcription	NH-A	brain
12	chr3:56629600-56648200	Weak transcription	NHDF-Ad	bronchial
13	chr3:56630000-56654400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr3:56630600-56645800	Weak transcription	HSMM	muscle
15	chr3:56630800-56645600	Weak transcription	Hela-S3	cervix
16	chr3:56632400-56644800	Weak transcription	A549	lung
17	chr3:56633800-56647800	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr3:56634000-56651400	Weak transcription	Fetal Brain Male	brain
19	chr3:56637800-56644200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr3:56640000-56650000	Weak transcription	HMEC	breast
21	chr3:56640200-56644600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr3:56640200-56645200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr3:56640400-56644600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr3:56640400-56644800	Weak transcription	Left Ventricle	heart
25	chr3:56640400-56650800	Weak transcription	Colon Smooth Muscle	Colon
26	chr3:56640600-56644400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr3:56640600-56644600	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr3:56640600-56644800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr3:56640600-56644800	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr3:56640600-56644800	Weak transcription	Right Ventricle	heart
31	chr3:56640600-56644800	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr3:56640600-56645000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr3:56640600-56646800	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr3:56640600-56647200	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr3:56640600-56647600	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr3:56640600-56647800	Weak transcription	GM12878-XiMat	blood
37	chr3:56640600-56650400	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr3:56640600-56652600	Weak transcription	Rectal Smooth Muscle	rectum
39	chr3:56640800-56644000	Weak transcription	Fetal Thymus	thymus
40	chr3:56640800-56644600	Weak transcription	Brain Substantia Nigra	brain
41	chr3:56640800-56644800	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr3:56640800-56644800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr3:56640800-56644800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr3:56640800-56644800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr3:56640800-56644800	Weak transcription	Primary B cells from peripheral blood	blood
46	chr3:56640800-56644800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr3:56640800-56644800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr3:56640800-56644800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr3:56640800-56644800	Weak transcription	Brain Anterior Caudate	brain
50	chr3:56640800-56644800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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