Variant report

Variant	rs9883362
Chromosome Location	chr3:83951043-83951044
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11127829	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13316809	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13319945	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28641143	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28878188	0.87[EUR][1000 genomes]
rs34804681	0.93[EUR][1000 genomes]
rs71328453	0.89[EUR][1000 genomes]
rs9309933	0.92[EUR][1000 genomes]
rs9822172	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9829058	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9829860	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9873101	0.92[EUR][1000 genomes]
rs9873876	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006081	chr3:83421626-84262106	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv1798193	chr3:83743689-83976987	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv523566	chr3:83768568-84006037	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1012918	chr3:83784488-84191829	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv536610	chr3:83784488-84191829	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv999325	chr3:83832320-84049295	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv428740	chr3:83886472-84069201	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv877073	chr3:83945963-84066103	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:83949800-83954200	Enhancers	Hela-S3	cervix
2	chr3:83950400-83951200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr3:83950400-83951200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr3:83950400-83951200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:83950600-83951200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr3:83950600-83951200	Enhancers	HUES6 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links