Variant report

Variant	rs9884488
Chromosome Location	chr4:148629603-148629604
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:148629398..148629956-chr4:148758339..148759290,3	MCF-7	breast:
2	chr4:148629250..148629859-chr4:148787588..148788271,2	K562	blood:
3	chr4:148629077..148630062-chr4:148758176..148759184,8	MCF-7	breast:
4	chr4:148629212..148629987-chr4:148742603..148743764,4	MCF-7	breast:
5	chr4:148628378..148630020-chr4:148787161..148788732,34	MCF-7	breast:
6	chr4:148628975..148629992-chr4:148787437..148788720,7	MCF-7	breast:
7	chr4:148629316..148630008-chr4:148760331..148760891,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2654947	0.83[YRI][hapmap]
rs6535547	0.91[YRI][hapmap]
rs6535551	0.91[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028958	chr4:148377752-148793485	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv498083	chr4:148519825-148917583	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv293162	chr4:148628710-148631612	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148627000-148630600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:148627000-148634200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr4:148629000-148631400	Enhancers	Placenta	Placenta
4	chr4:148629200-148630200	Enhancers	HMEC	breast
5	chr4:148629200-148630400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:148629400-148629800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:148629400-148629800	Enhancers	Adipose Nuclei	Adipose
8	chr4:148629400-148629800	Active TSS	Brain Hippocampus Middle	brain
9	chr4:148629400-148629800	Active TSS	Colon Smooth Muscle	Colon
10	chr4:148629400-148629800	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
11	chr4:148629400-148629800	Active TSS	Skeletal Muscle Male	skeletal muscle
12	chr4:148629400-148629800	Active TSS	Skeletal Muscle Female	skeletal muscle
13	chr4:148629400-148629800	Enhancers	NHLF	lung
14	chr4:148629400-148631000	Weak transcription	GM12878-XiMat	blood
15	chr4:148629400-148634600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr4:148629600-148629800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr4:148629600-148629800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr4:148629600-148629800	Enhancers	Muscle Satellite Cultured Cells	--
19	chr4:148629600-148629800	Flanking Active TSS	Stomach Smooth Muscle	stomach
20	chr4:148629600-148629800	Enhancers	NHDF-Ad	bronchial
21	chr4:148629600-148629800	Flanking Active TSS	Osteobl	bone
22	chr4:148629600-148630000	Enhancers	Duodenum Mucosa	Duodenum

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