Variant report

Variant	rs9885852
Chromosome Location	chr6:13723533-13723534
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs9296778	1.00[AFR][1000 genomes]
rs9464183	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv883451	chr6:13704341-13728670	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
3	nsv883452	chr6:13704341-13733565	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13717400-13723600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:13720200-13729800	Weak transcription	Esophagus	oesophagus
3	chr6:13721200-13723600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:13721800-13724000	Weak transcription	Placenta	Placenta
5	chr6:13722400-13723600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:13722800-13725200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr6:13722800-13725600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr6:13722800-13726200	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr6:13722800-13726200	Enhancers	Stomach Mucosa	stomach
10	chr6:13722800-13726800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr6:13722800-13727000	Enhancers	Primary T cells fromperipheralblood	blood
12	chr6:13722800-13727800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr6:13723000-13723600	Enhancers	K562	blood
14	chr6:13723200-13725400	Enhancers	NHEK	skin
15	chr6:13723200-13726800	Enhancers	HMEC	breast
16	chr6:13723400-13723600	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr6:13723400-13723800	Enhancers	Gastric	stomach
18	chr6:13723400-13724200	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr6:13723400-13725600	Enhancers	Primary T helper cells PMA-I stimulated	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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