Variant report

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10102713	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28577138	1.00[AMR][1000 genomes]
rs28648622	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017085	chr8:34742896-35594241	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539546	chr8:34742896-35594241	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:34879600-34881200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr8:34879600-34881600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr8:34879600-34881600	Enhancers	Hela-S3	cervix
4	chr8:34879600-34882000	Enhancers	HMEC	breast
5	chr8:34879800-34881200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr8:34879800-34881200	Enhancers	Muscle Satellite Cultured Cells	--
7	chr8:34879800-34881200	Enhancers	HUVEC	blood vessel
8	chr8:34879800-34881400	Enhancers	NHEK	skin
9	chr8:34879800-34881600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr8:34879800-34881600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr8:34879800-34881600	Enhancers	NH-A	brain
12	chr8:34880000-34881200	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr8:34880000-34881400	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr8:34880400-34881400	Enhancers	H9 Cell Line	embryonic stem cell
15	chr8:34880600-34881200	Flanking Active TSS	A549	lung
16	chr8:34880600-34881400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr8:34880600-34881600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr8:34880800-34881400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr8:34880800-34886000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr8:34881000-34881400	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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