Variant report

Variant	rs988653
Chromosome Location	chr15:55088034-55088035
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11634525	0.89[AFR][1000 genomes]
rs13380345	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1566566	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1909944	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56909278	1.00[AMR][1000 genomes]
rs60076255	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60820899	0.96[AFR][1000 genomes]
rs73411776	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73411787	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73411799	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73413703	0.89[AFR][1000 genomes]
rs73413706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73413710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73413714	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73413739	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73413743	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73413745	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73413750	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv833013	chr15:54927825-55135274	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1035785	chr15:54951691-55266222	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv542390	chr15:54951691-55266222	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1045264	chr15:54981538-55103777	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1039860	chr15:55010228-55198111	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv1043176	chr15:55010228-55563000	Genic enhancers Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
8	nsv1042741	chr15:55068022-55622497	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
9	nsv525041	chr15:55068209-55136755	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:55082600-55090400	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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