Variant report

Variant	rs9886925
Chromosome Location	chr9:14795679-14795680
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:14795448-14795829	HepG2	liver:	n/a	n/a
2	POLR2A	chr9:14795509-14795701	HepG2	liver:	n/a	n/a
3	POLR2A	chr9:14795105-14795874	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
FREM1	TF binding region

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10738379	0.94[CEU][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10738380	0.94[CEU][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10756613	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10810244	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10810246	0.82[CHB][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs10810247	1.00[CEU][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10961712	0.90[ASN][1000 genomes]
rs10961713	0.90[ASN][1000 genomes]
rs12685688	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs34540662	0.91[ASN][1000 genomes]
rs72711319	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9886892	0.94[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv915804	chr9:14182608-14903050	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv613637	chr9:14524438-15011915	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1023955	chr9:14754010-14800259	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv2761502	chr9:14757877-14827373	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv831518	chr9:14760638-14953501	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv1030626	chr9:14786215-14853681	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	nsv540071	chr9:14786215-14853681	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	nsv892617	chr9:14791348-14889834	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14745000-14809800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr9:14755800-14812400	Weak transcription	Pancreas	Pancrea
3	chr9:14764800-14809600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:14768600-14808800	Weak transcription	Fetal Intestine Small	intestine
5	chr9:14773400-14796400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr9:14779200-14798600	Strong transcription	Fetal Kidney	kidney
7	chr9:14779800-14853200	Weak transcription	Placenta	Placenta
8	chr9:14780400-14795800	Weak transcription	Left Ventricle	heart
9	chr9:14780400-14843200	Weak transcription	Fetal Heart	heart
10	chr9:14782000-14822000	Weak transcription	Fetal Brain Male	brain
11	chr9:14782800-14822000	Weak transcription	Rectal Smooth Muscle	rectum
12	chr9:14783600-14800200	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr9:14786800-14814400	Strong transcription	Fetal Lung	lung
14	chr9:14788400-14806800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr9:14789400-14809200	Weak transcription	Fetal Intestine Large	intestine
16	chr9:14790200-14797800	Strong transcription	Adipose Nuclei	Adipose
17	chr9:14791200-14801600	Weak transcription	Small Intestine	intestine
18	chr9:14791600-14799200	Strong transcription	HepG2	liver
19	chr9:14791800-14796000	Weak transcription	Duodenum Mucosa	Duodenum
20	chr9:14793000-14822600	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr9:14793600-14799400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr9:14793800-14798200	Strong transcription	Colon Smooth Muscle	Colon
23	chr9:14794000-14806400	Weak transcription	Fetal Muscle Leg	muscle
24	chr9:14794400-14797200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr9:14794600-14797200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr9:14794800-14798400	Weak transcription	Fetal Stomach	stomach
27	chr9:14795400-14797800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr9:14795600-14796400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr9:14795600-14796400	Strong transcription	Fetal Muscle Trunk	muscle
30	chr9:14795600-14796800	Strong transcription	Aorta	Aorta

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