Variant report

Variant	rs9888500
Chromosome Location	chr13:98277704-98277705
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10450812	1.00[AMR][1000 genomes]
rs11839473	1.00[AMR][1000 genomes]
rs12100258	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6650284	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6650285	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9943872	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9943921	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043113	chr13:98136208-98485012	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv541884	chr13:98136208-98485012	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv900940	chr13:98225221-98281637	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1140	chr13:98233230-98278197	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98274800-98278400	Weak transcription	Fetal Brain Male	brain
2	chr13:98274800-98283000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr13:98275000-98280600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr13:98276400-98279200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr13:98276800-98281800	Weak transcription	Psoas Muscle	Psoas

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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