Variant report

Variant	rs988875
Chromosome Location	chr22:33939558-33939559
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:33933113..33935485-chr22:33937666..33939783,2	MCF-7	breast:
2	chr22:33934014..33936443-chr22:33938312..33940235,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1547069	0.99[ASN][1000 genomes]
rs1972207	0.99[ASN][1000 genomes]
rs1972209	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2010833	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2065048	0.96[CEU][hapmap]
rs2267232	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs2283911	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2283912	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2283913	0.96[ASN][1000 genomes]
rs2283914	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2283915	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2283916	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2413191	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs2899210	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs3819662	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs3986016	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4821161	0.99[ASN][1000 genomes]
rs5749629	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5754603	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6518832	0.84[ASN][1000 genomes]
rs762056	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs762061	0.92[ASN][1000 genomes]
rs989556	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948523	chr22:33414164-34098417	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
2	nsv934109	chr22:33722066-34339500	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1062127	chr22:33755479-34085278	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv544683	chr22:33755479-34085278	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
5	nsv531588	chr22:33776857-34150188	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
6	nsv914983	chr22:33800119-34035034	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1060283	chr22:33809137-34043739	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
8	nsv544684	chr22:33809137-34043739	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1055791	chr22:33822226-34159536	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
10	nsv1065417	chr22:33823850-34053325	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
11	nsv933309	chr22:33825232-34053000	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
12	esv2763261	chr22:33831348-34288389	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
13	nsv917167	chr22:33852676-34137036	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv1062832	chr22:33861531-34143295	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
15	nsv544686	chr22:33861531-34143295	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
16	nsv914986	chr22:33863218-33967289	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	nsv914987	chr22:33920421-34047427	ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	nsv1057450	chr22:33928913-34849012	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33917400-33966800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr22:33929000-33956600	Weak transcription	Gastric	stomach
3	chr22:33931400-33957600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr22:33934200-33945000	Weak transcription	Esophagus	oesophagus
5	chr22:33935400-33940600	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr22:33935800-33940400	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr22:33936000-33940600	Weak transcription	Primary B cells from peripheral blood	blood
8	chr22:33936400-33958200	Weak transcription	Aorta	Aorta
9	chr22:33936600-33939800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr22:33936600-33940800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr22:33936800-33939600	Enhancers	Liver	Liver
12	chr22:33936800-33940400	Weak transcription	Fetal Brain Female	brain
13	chr22:33936800-33940800	Weak transcription	Brain Angular Gyrus	brain
14	chr22:33936800-33940800	Weak transcription	HSMMtube	muscle
15	chr22:33936800-33941200	Enhancers	A549	lung
16	chr22:33936800-33947600	Weak transcription	Ovary	ovary
17	chr22:33936800-33948800	Weak transcription	Fetal Stomach	stomach
18	chr22:33937000-33940400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr22:33937000-33940600	Weak transcription	HSMM	muscle
20	chr22:33937000-33940800	Weak transcription	Brain Substantia Nigra	brain
21	chr22:33937000-33941000	Weak transcription	Brain Hippocampus Middle	brain
22	chr22:33937000-33941000	Enhancers	HepG2	liver
23	chr22:33937000-33944800	Weak transcription	GM12878-XiMat	blood
24	chr22:33937000-33945200	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr22:33937000-33956200	Weak transcription	Pancreas	Pancrea
26	chr22:33937000-33965000	Weak transcription	Brain Anterior Caudate	brain
27	chr22:33937200-33965000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr22:33937400-33940200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr22:33937400-33957200	Weak transcription	Fetal Heart	heart
30	chr22:33937600-33942400	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr22:33937800-33939600	Enhancers	Small Intestine	intestine
32	chr22:33938400-33939800	Weak transcription	Fetal Lung	lung
33	chr22:33938400-33940000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr22:33938400-33940200	Enhancers	Fetal Intestine Small	intestine
35	chr22:33938600-33940200	Enhancers	Fetal Intestine Large	intestine
36	chr22:33938600-33940600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr22:33938800-33939800	Weak transcription	Right Atrium	heart
38	chr22:33938800-33940000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr22:33938800-33940800	Weak transcription	NHDF-Ad	bronchial
40	chr22:33939000-33939800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr22:33939000-33939800	Weak transcription	Left Ventricle	heart
42	chr22:33939000-33939800	Weak transcription	Right Ventricle	heart
43	chr22:33939000-33940200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr22:33939000-33940400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr22:33939200-33939800	Enhancers	Cortex derived primary cultured neurospheres	brain
46	chr22:33939200-33940600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr22:33939400-33939600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
48	chr22:33939400-33939600	Enhancers	Pancreatic Islets	Pancreatic Islet
49	chr22:33939400-33939600	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr22:33939400-33939800	Enhancers	Duodenum Smooth Muscle	Duodenum

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