Variant report

Variant	rs9890105
Chromosome Location	chr17:19929370-19929371
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:19927266..19929867-chr17:19933852..19935376,2	K562	blood:

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs16960545	1.00[ASN][1000 genomes]
rs16960602	1.00[AMR][1000 genomes]
rs281366	1.00[ASN][1000 genomes]
rs281367	1.00[ASN][1000 genomes]
rs28410781	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28424266	1.00[AMR][1000 genomes]
rs28581607	1.00[ASN][1000 genomes]
rs28653561	1.00[AMR][1000 genomes]
rs28767032	1.00[AMR][1000 genomes]
rs28830504	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28865331	1.00[AMR][1000 genomes]
rs3909257	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6587207	1.00[AMR][1000 genomes]
rs6587208	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6587211	1.00[ASN][1000 genomes]
rs7207459	1.00[AMR][1000 genomes]
rs7207702	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7208033	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7210076	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7210751	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7214107	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7215639	1.00[ASN][1000 genomes]
rs7215769	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7217387	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7217862	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7217868	1.00[AMR][1000 genomes]
rs7217928	1.00[ASN][1000 genomes]
rs7218251	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7218919	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7219153	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7219487	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7220490	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7221669	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7223323	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7224373	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7224419	1.00[AMR][1000 genomes]
rs7224567	1.00[AMR][1000 genomes]
rs7224713	1.00[ASN][1000 genomes]
rs7224875	1.00[AMR][1000 genomes]
rs8065122	1.00[AMR][1000 genomes]
rs8068015	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8071670	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8079093	1.00[AMR][1000 genomes]
rs8080190	1.00[AMR][1000 genomes]
rs8082671	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9891008	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9892175	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9892271	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9893185	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9893296	1.00[AMR][1000 genomes]
rs9894666	1.00[AMR][1000 genomes]
rs9895556	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9896010	1.00[AMR][1000 genomes]
rs9896387	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9896499	1.00[AMR][1000 genomes]
rs9896641	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9897430	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9897607	1.00[AMR][1000 genomes]
rs9900393	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9900441	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9900510	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9901862	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9902663	1.00[AMR][1000 genomes]
rs9904059	1.00[AMR][1000 genomes]
rs9908415	1.00[AMR][1000 genomes]
rs9909011	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9909012	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9909242	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9909544	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9911872	1.00[AMR][1000 genomes]
rs9912184	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9912657	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9913858	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9914328	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9914429	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9914502	1.00[ASN][1000 genomes]
rs9915039	1.00[AMR][1000 genomes]
rs9915413	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062853	chr17:19547912-20206601	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv907868	chr17:19768924-20217122	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv833394	chr17:19827714-19999577	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1060337	chr17:19828636-20204872	Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv543257	chr17:19828636-20204872	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv907870	chr17:19871922-20001612	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv907871	chr17:19927699-20088492	Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:19914600-19938400	Weak transcription	Brain Hippocampus Middle	brain
2	chr17:19921600-19931600	Weak transcription	Ovary	ovary
3	chr17:19922200-19935800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr17:19923400-19930800	Weak transcription	K562	blood
5	chr17:19923400-19956600	Weak transcription	A549	lung
6	chr17:19923600-19946400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr17:19926200-19932400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr17:19926400-19947000	Weak transcription	Brain Angular Gyrus	brain
9	chr17:19926800-19930200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr17:19928400-19937000	Weak transcription	Brain Cingulate Gyrus	brain

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