Variant report

Variant	rs9894084
Chromosome Location	chr17:66799389-66799390
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11650010	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11657619	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12450787	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12452140	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35131140	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35295565	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4968950	0.81[ASN][1000 genomes]
rs4968953	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4968955	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4968956	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4968957	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55982272	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9302983	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9894119	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9898028	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9902321	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9905519	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv575927	chr17:66787428-66817866	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv10514	chr17:66797847-66799518	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66788000-66805800	Weak transcription	Right Atrium	heart
2	chr17:66792600-66803200	Weak transcription	HepG2	liver
3	chr17:66793800-66799400	Weak transcription	Brain Hippocampus Middle	brain
4	chr17:66797000-66803200	Weak transcription	Adipose Nuclei	Adipose
5	chr17:66797800-66800400	Enhancers	Ovary	ovary
6	chr17:66798200-66803600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr17:66798600-66799400	Weak transcription	Fetal Muscle Leg	muscle
8	chr17:66799200-66799800	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr17:66799200-66800000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr17:66799200-66800000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr17:66799200-66800000	Enhancers	Fetal Heart	heart
12	chr17:66799200-66800400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr17:66799200-66800400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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