Variant report

Variant	rs9895221
Chromosome Location	chr17:38669288-38669289
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:38632026..38634246-chr17:38667169..38669339,2	K562	blood:
2	chr17:38643054..38644856-chr17:38668442..38670068,2	MCF-7	breast:
3	chr17:38661296..38663245-chr17:38668253..38670398,2	MCF-7	breast:
4	chr17:38653905..38655672-chr17:38666687..38669670,2	MCF-7	breast:
5	chr17:38525489..38527543-chr17:38668020..38669754,2	MCF-7	breast:
6	chr17:38648823..38651196-chr17:38668294..38669923,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs28493507	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7212543	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7219622	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7221799	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs73310952	0.96[ASN][1000 genomes]
rs8069091	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9901176	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9901908	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058185	chr17:38629339-38689908	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38665800-38670200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr17:38666000-38669600	Enhancers	NH-A	brain
3	chr17:38666000-38670200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr17:38666200-38670000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr17:38666200-38670600	Enhancers	Placenta	Placenta
6	chr17:38666400-38669800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr17:38666600-38669400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr17:38666600-38670200	Enhancers	NHEK	skin
9	chr17:38666800-38670400	Weak transcription	Spleen	Spleen
10	chr17:38666800-38670600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr17:38666800-38671400	Weak transcription	Left Ventricle	heart
12	chr17:38666800-38674400	Weak transcription	Pancreas	Pancrea
13	chr17:38666800-38675000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr17:38666800-38677400	Weak transcription	Right Atrium	heart
15	chr17:38667000-38673000	Enhancers	A549	lung
16	chr17:38667400-38669800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr17:38667400-38673000	Weak transcription	Esophagus	oesophagus
18	chr17:38668200-38671400	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr17:38668200-38677400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr17:38668400-38671400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr17:38668400-38680600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr17:38668600-38669800	Weak transcription	Psoas Muscle	Psoas
23	chr17:38668600-38672800	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr17:38668600-38675200	Weak transcription	Gastric	stomach
25	chr17:38668800-38669800	Weak transcription	HSMMtube	muscle
26	chr17:38668800-38671400	Weak transcription	Lung	lung
27	chr17:38668800-38672600	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr17:38668800-38672600	Weak transcription	Osteobl	bone
29	chr17:38668800-38674600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr17:38669000-38669400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr17:38669000-38669400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr17:38669000-38670000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr17:38669000-38670400	Enhancers	HepG2	liver
34	chr17:38669000-38670600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr17:38669000-38670800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr17:38669000-38671200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr17:38669000-38671200	Weak transcription	HMEC	breast
38	chr17:38669000-38671400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr17:38669000-38671400	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr17:38669000-38671600	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr17:38669000-38672200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr17:38669000-38672800	Weak transcription	NHLF	lung
43	chr17:38669000-38673000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr17:38669200-38669400	Flanking Active TSS	Hela-S3	cervix
45	chr17:38669200-38669600	Weak transcription	K562	blood
46	chr17:38669200-38669800	Weak transcription	HSMM	muscle

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