Variant report

Variant	rs9895397
Chromosome Location	chr17:15301577-15301578
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12941158	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2875119	1.00[AMR][1000 genomes]
rs4792591	1.00[AMR][1000 genomes]
rs59768556	1.00[AMR][1000 genomes]
rs60421010	1.00[AMR][1000 genomes]
rs73280339	1.00[AMR][1000 genomes]
rs73280922	1.00[AMR][1000 genomes]
rs73978001	1.00[AMR][1000 genomes]
rs9891798	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492304	chr17:15043353-15611753	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv916652	chr17:15093600-15856310	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv427990	chr17:15154329-15434020	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv907703	chr17:15199907-15370701	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv949172	chr17:15206970-15416808	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	nsv1055677	chr17:15294011-15561130	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
7	nsv1059056	chr17:15294011-15856861	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15300400-15301600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr17:15300800-15302800	Enhancers	Ovary	ovary
3	chr17:15300800-15302800	Enhancers	Pancreas	Pancrea
4	chr17:15300800-15303000	Enhancers	Fetal Stomach	stomach
5	chr17:15301000-15301600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr17:15301000-15301600	Enhancers	Brain Hippocampus Middle	brain
7	chr17:15301000-15301600	Enhancers	Stomach Smooth Muscle	stomach
8	chr17:15301000-15301800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr17:15301000-15302000	Enhancers	Duodenum Mucosa	Duodenum
10	chr17:15301000-15302400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr17:15301000-15302600	Enhancers	Colon Smooth Muscle	Colon
12	chr17:15301000-15302600	Enhancers	Placenta	Placenta
13	chr17:15301000-15302800	Enhancers	Brain Substantia Nigra	brain
14	chr17:15301000-15302800	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr17:15301000-15302800	Enhancers	Fetal Muscle Trunk	muscle
16	chr17:15301000-15302800	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr17:15301000-15302800	Enhancers	NHEK	skin
18	chr17:15301000-15303000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr17:15301000-15303000	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr17:15301000-15303000	Enhancers	Fetal Muscle Leg	muscle
21	chr17:15301000-15303000	Enhancers	Left Ventricle	heart
22	chr17:15301000-15303000	Enhancers	Rectal Smooth Muscle	rectum
23	chr17:15301000-15303000	Enhancers	HMEC	breast
24	chr17:15301000-15303200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr17:15301000-15303200	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr17:15301200-15301600	Enhancers	Brain Cingulate Gyrus	brain
27	chr17:15301200-15301600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
28	chr17:15301200-15301800	Enhancers	Adipose Nuclei	Adipose
29	chr17:15301200-15301800	Enhancers	NH-A	brain
30	chr17:15301200-15302000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr17:15301200-15302000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr17:15301200-15302200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr17:15301200-15302400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr17:15301200-15302600	Enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr17:15301200-15302600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr17:15301200-15302600	Enhancers	Fetal Lung	lung
37	chr17:15301200-15302800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr17:15301200-15302800	Enhancers	Fetal Heart	heart
39	chr17:15301200-15303000	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr17:15301200-15303000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
41	chr17:15301200-15303200	Enhancers	NHLF	lung
42	chr17:15301400-15301600	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr17:15301400-15301600	Enhancers	Gastric	stomach
44	chr17:15301400-15301600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
45	chr17:15301400-15301800	Enhancers	Osteobl	bone
46	chr17:15301400-15302200	Enhancers	NHDF-Ad	bronchial
47	chr17:15301400-15302400	Enhancers	Primary hematopoietic stem cells	blood
48	chr17:15301400-15302400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
49	chr17:15301400-15302400	Enhancers	Hela-S3	cervix
50	chr17:15301400-15302600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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