Variant report

Variant	rs9896093
Chromosome Location	chr17:16815096-16815097
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs28420088	1.00[AMR][1000 genomes]
rs586579	1.00[AMR][1000 genomes]
rs8065008	1.00[AMR][1000 genomes]
rs8066877	1.00[YRI][hapmap]
rs8078555	1.00[AMR][1000 genomes]
rs9890378	1.00[AMR][1000 genomes]
rs9890566	1.00[AMR][1000 genomes]
rs9897136	1.00[AMR][1000 genomes]
rs9904989	1.00[AMR][1000 genomes]
rs9906230	1.00[AMR][1000 genomes]
rs9910170	1.00[AMR][1000 genomes]
rs9910345	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058448	chr17:16389870-16926287	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	esv2758442	chr17:16527056-16817437	Active TSS Bivalent Enhancer ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	esv2758676	chr17:16527056-16817437	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv427991	chr17:16527056-16817437	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	esv2753951	chr17:16660721-16848750	Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	esv2755100	chr17:16660721-16848750	Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
7	nsv833379	chr17:16683585-16859539	Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
8	esv3367254	chr17:16785269-16828294	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv3338978	chr17:16785520-16828294	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1055688	chr17:16800788-16868860	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv960193	chr17:16811200-16831798	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv1058863	chr17:16812121-16943780	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
13	nsv543227	chr17:16812121-16943780	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16810200-16816400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
2	chr17:16810600-16816200	Enhancers	Fetal Thymus	thymus
3	chr17:16811800-16816200	Enhancers	Fetal Muscle Leg	muscle
4	chr17:16811800-16816600	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr17:16812000-16816400	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr17:16812000-16816400	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr17:16812600-16816200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr17:16812800-16816200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
9	chr17:16813400-16816000	Enhancers	Primary B cells from cord blood	blood
10	chr17:16813800-16816200	Enhancers	Brain Hippocampus Middle	brain
11	chr17:16814200-16815200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr17:16814200-16815200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr17:16814200-16816200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr17:16814200-16817000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr17:16814400-16816200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr17:16814600-16815200	Enhancers	Lung	lung
17	chr17:16814600-16816200	Enhancers	Brain Cingulate Gyrus	brain
18	chr17:16814600-16816200	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr17:16814600-16816400	Enhancers	Thymus	Thymus
20	chr17:16814800-16815200	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr17:16814800-16815200	Flanking Active TSS	Primary T cells from cord blood	blood
22	chr17:16814800-16815200	Enhancers	Brain Substantia Nigra	brain
23	chr17:16814800-16815200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
24	chr17:16814800-16815800	Enhancers	Primary B cells from peripheral blood	blood
25	chr17:16814800-16816000	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr17:16814800-16816000	Enhancers	Fetal Muscle Trunk	muscle
27	chr17:16815000-16815200	Flanking Bivalent TSS/Enh	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr17:16815000-16815200	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
29	chr17:16815000-16815200	Enhancers	Dnd41	blood
30	chr17:16815000-16815600	Enhancers	HUVEC	blood vessel
31	chr17:16815000-16815800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
32	chr17:16815000-16816200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
33	chr17:16815000-16816600	Enhancers	Primary T helper naive cells from peripheral blood	blood

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