Variant report

Variant	rs989628
Chromosome Location	chr2:205393889-205393890
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10932073	0.82[AMR][1000 genomes]
rs2197691	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv964353	chr2:205303005-205473935	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205389000-205395800	Weak transcription	Aorta	Aorta
2	chr2:205391000-205394400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr2:205393200-205394200	Weak transcription	Fetal Intestine Small	intestine
4	chr2:205393800-205394200	Enhancers	Rectal Mucosa Donor 29	rectum
5	chr2:205393800-205394200	Weak transcription	Small Intestine	intestine
6	chr2:205393800-205394400	Enhancers	Duodenum Mucosa	Duodenum
7	chr2:205393800-205394600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
8	chr2:205393800-205395200	Enhancers	Breast Myoepithelial Primary Cells	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links