Variant report

Variant	rs9896422
Chromosome Location	chr17:66865496-66865497
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:66851314..66853680-chr17:66863743..66866454,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1008821	0.83[ASN][1000 genomes]
rs2218351	0.83[ASN][1000 genomes]
rs4148006	0.91[CEU][hapmap];0.85[CHB][hapmap];0.85[TSI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6501851	0.85[CHB][hapmap]
rs73357307	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8068987	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv908694	chr17:66802992-66913936	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66858000-66869800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr17:66858200-66866000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr17:66858200-66869200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr17:66858200-66869200	Weak transcription	Brain Substantia Nigra	brain
5	chr17:66860200-66871200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr17:66861600-66870200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr17:66861800-66869200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr17:66862800-66867800	Weak transcription	Fetal Muscle Trunk	muscle
9	chr17:66863600-66875600	Weak transcription	Fetal Stomach	stomach
10	chr17:66863800-66869200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr17:66864000-66869400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr17:66864400-66866200	Strong transcription	Left Ventricle	heart
13	chr17:66864400-66869200	Weak transcription	Fetal Muscle Leg	muscle
14	chr17:66864400-66869800	Weak transcription	Psoas Muscle	Psoas
15	chr17:66864800-66869200	Strong transcription	Fetal Lung	lung
16	chr17:66865000-66867800	Weak transcription	Small Intestine	intestine
17	chr17:66865000-66869800	Weak transcription	Fetal Brain Male	brain
18	chr17:66865200-66866400	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr17:66865200-66867000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr17:66865200-66869200	Weak transcription	Liver	Liver
21	chr17:66865200-66869400	Weak transcription	Brain Hippocampus Middle	brain
22	chr17:66865400-66865800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr17:66865400-66866200	Weak transcription	Ovary	ovary
24	chr17:66865400-66866600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr17:66865400-66866800	Weak transcription	Adipose Nuclei	Adipose
26	chr17:66865400-66868800	Weak transcription	Fetal Heart	heart
27	chr17:66865400-66871200	Weak transcription	Brain Cingulate Gyrus	brain

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