Variant report

Variant	rs9896534
Chromosome Location	chr17:15192523-15192524
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1903112	0.81[JPT][hapmap]
rs2286516	0.80[CEU][hapmap];0.81[JPT][hapmap]
rs231018	0.91[JPT][hapmap]
rs7209263	0.81[CEU][hapmap];0.81[JPT][hapmap]
rs7224677	0.81[CEU][hapmap];0.81[JPT][hapmap]
rs7224992	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs973761	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066329	chr17:14983674-15294071	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv543212	chr17:14983674-15294071	Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	nsv492304	chr17:15043353-15611753	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv916652	chr17:15093600-15856310	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
5	nsv427990	chr17:15154329-15434020	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15173200-15192600	Weak transcription	Left Ventricle	heart
2	chr17:15189600-15195000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr17:15190800-15193200	Enhancers	NHDF-Ad	bronchial
4	chr17:15191200-15195200	Weak transcription	Right Atrium	heart
5	chr17:15191400-15192600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr17:15191400-15192600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr17:15191400-15192600	Weak transcription	Gastric	stomach
8	chr17:15191400-15195000	Weak transcription	Right Ventricle	heart
9	chr17:15191400-15195400	Weak transcription	Lung	lung
10	chr17:15191600-15192600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr17:15191600-15192600	Weak transcription	Adipose Nuclei	Adipose
12	chr17:15191600-15205200	Weak transcription	Fetal Lung	lung
13	chr17:15192000-15192600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr17:15192000-15192600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr17:15192200-15192600	Enhancers	Hela-S3	cervix
16	chr17:15192200-15192600	Enhancers	Osteobl	bone
17	chr17:15192400-15193000	Flanking Active TSS	A549	lung
18	chr17:15192400-15193200	Enhancers	K562	blood
19	chr17:15192400-15193600	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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