Variant report

Variant	rs9897053
Chromosome Location	chr17:19783295-19783296
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12103837	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16960425	1.00[AMR][1000 genomes]
rs28416178	1.00[AMR][1000 genomes]
rs7216958	0.88[YRI][hapmap]
rs8064945	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8072354	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9889660	1.00[AMR][1000 genomes]
rs9894723	0.93[YRI][hapmap]
rs9895806	1.00[AMR][1000 genomes]
rs9905439	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9906125	1.00[AMR][1000 genomes]
rs9910607	1.00[AMR][1000 genomes]
rs9912443	1.00[AMR][1000 genomes]
rs9913673	1.00[AMR][1000 genomes]
rs9914597	1.00[AMR][1000 genomes]
rs9914797	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9915262	1.00[AMR][1000 genomes]
rs9915902	1.00[AMR][1000 genomes]
rs9916309	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062853	chr17:19547912-20206601	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv1063892	chr17:19564634-19808485	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv482398	chr17:19673458-19808039	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1057469	chr17:19696714-19787062	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv907868	chr17:19768924-20217122	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	esv2763158	chr17:19777544-19789227	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:19771600-19787000	Weak transcription	Gastric	stomach
2	chr17:19778800-19783400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr17:19780600-19784200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr17:19780800-19784200	Enhancers	Primary T cells fromperipheralblood	blood
5	chr17:19781000-19784000	Enhancers	Primary T cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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