Variant report

Variant	rs9897593
Chromosome Location	chr17:59923141-59923142
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:59921498..59924075-chr2:74210164..74212980,2	MCF-7	breast:
2	chr17:59696755..59698518-chr17:59922887..59924603,2	MCF-7	breast:
3	chr17:59672841..59675724-chr17:59920938..59923292,2	MCF-7	breast:
4	chr17:59922631..59924965-chr20:55840316..55842236,2	MCF-7	breast:
5	chr17:59922834..59925461-chr20:55688091..55690471,2	MCF-7	breast:
6	chr17:59918294..59920479-chr17:59920903..59923192,2	MCF-7	breast:
7	chr1:40264965..40265673-chr17:59922798..59923489,2	MCF-7	breast:
8	chr17:59922882..59925305-chr20:55682446..55685086,2	MCF-7	breast:
9	chr17:59923118..59924764-chr17:59928753..59930599,2	K562	blood:
10	chr17:59922363..59930982-chr17:59932743..59942161,16	K562	blood:
11	chr17:59923027..59925292-chr20:60641069..60642789,2	MCF-7	breast:
12	chr17:59922988..59926695-chr17:59932114..59939260,7	K562	blood:

No data

Variant related genes	Relation type
ENSG00000101144	Chromatin interaction
ENSG00000203266	Chromatin interaction
ENSG00000136492	Chromatin interaction
ENSG00000235499	Chromatin interaction
ENSG00000226308	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9905071	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378293	chr17:59744117-60124899	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
2	nsv908673	chr17:59767501-59926645	Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	94 gene(s)	inside rSNPs	diseases
3	nsv575842	chr17:59812748-59927307	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	70 gene(s)	inside rSNPs	diseases
4	nsv908675	chr17:59835864-59937286	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	67 gene(s)	inside rSNPs	diseases
5	nsv575843	chr17:59869081-59935723	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
6	nsv916786	chr17:59890834-60103687	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59863600-59925000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr17:59870400-59933400	Weak transcription	Fetal Intestine Large	intestine
3	chr17:59884200-59933200	Weak transcription	K562	blood
4	chr17:59898800-59939600	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr17:59898800-59939800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr17:59899400-59924200	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr17:59904200-59927000	Weak transcription	Fetal Kidney	kidney
8	chr17:59904800-59933200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr17:59905400-59923800	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr17:59905400-59931400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr17:59905600-59923800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr17:59905800-59923600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr17:59905800-59939000	Weak transcription	Primary T cells from cord blood	blood
14	chr17:59906200-59940200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr17:59911600-59937800	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr17:59911800-59939000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr17:59912000-59925600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr17:59912000-59938400	Weak transcription	HUVEC	blood vessel
19	chr17:59912200-59939200	Weak transcription	HSMM	muscle
20	chr17:59912200-59939800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr17:59912400-59923600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr17:59912400-59931400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr17:59912400-59931400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr17:59912400-59938600	Weak transcription	NHDF-Ad	bronchial
25	chr17:59912400-59938600	Weak transcription	NHEK	skin
26	chr17:59912400-59939400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr17:59912400-59940000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr17:59912400-59940400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr17:59914600-59932600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr17:59914600-59938600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr17:59916400-59931400	Strong transcription	Dnd41	blood
32	chr17:59916600-59938600	Strong transcription	HUES64 Cell Line	embryonic stem cell
33	chr17:59917400-59925800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
34	chr17:59917800-59939200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr17:59918000-59939000	Weak transcription	Duodenum Mucosa	Duodenum
36	chr17:59918800-59927400	Strong transcription	HUES6 Cell Line	embryonic stem cell
37	chr17:59919000-59924200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr17:59919200-59924600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr17:59919200-59924800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr17:59919200-59925400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr17:59919200-59927400	Strong transcription	A549	lung
42	chr17:59919200-59928000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
43	chr17:59919200-59928000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr17:59919400-59923200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr17:59919400-59928400	Strong transcription	HUES48 Cell Line	embryonic stem cell
46	chr17:59919800-59934600	Weak transcription	Ovary	ovary
47	chr17:59920400-59940200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr17:59920600-59924000	Weak transcription	GM12878-XiMat	blood
49	chr17:59920600-59925800	Strong transcription	HepG2	liver
50	chr17:59920600-59927000	Weak transcription	Fetal Lung	lung

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