Variant report

Variant	rs989815
Chromosome Location	chr9:8386418-8386419
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1021719	0.86[JPT][hapmap]
rs10758969	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10758970	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10815842	0.83[JPT][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes]
rs10815843	0.82[ASN][1000 genomes]
rs10815844	0.91[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs1500327	0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs1500329	0.92[ASN][1000 genomes]
rs1500330	0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs1535676	0.90[CEU][hapmap]
rs2279776	0.80[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3847294	0.82[CEU][hapmap]
rs4742492	0.86[JPT][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes]
rs4742498	0.90[JPT][hapmap]
rs7031533	0.82[JPT][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes]
rs989813	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs989814	0.82[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8414	chr9:7827373-8511613	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv526971	chr9:8382720-8388220	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8339600-8397600	Weak transcription	Fetal Muscle Leg	muscle
2	chr9:8361400-8401600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr9:8364800-8401600	Weak transcription	Brain Germinal Matrix	brain
4	chr9:8365000-8395400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr9:8365200-8386800	Weak transcription	Brain Anterior Caudate	brain
6	chr9:8367200-8394600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr9:8367200-8399800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr9:8373000-8402200	Weak transcription	Fetal Kidney	kidney
9	chr9:8374000-8394400	Weak transcription	Fetal Heart	heart
10	chr9:8374600-8386800	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr9:8376600-8386800	Weak transcription	Brain Hippocampus Middle	brain
12	chr9:8376800-8386600	Weak transcription	Primary hematopoietic stem cells	blood
13	chr9:8376800-8393200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr9:8376800-8401800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr9:8377800-8406400	Weak transcription	Fetal Brain Female	brain
16	chr9:8383000-8386800	Weak transcription	Ovary	ovary
17	chr9:8383400-8387600	Weak transcription	Pancreas	Pancrea
18	chr9:8383600-8405200	Weak transcription	Aorta	Aorta
19	chr9:8384000-8387800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr9:8384000-8389200	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr9:8384200-8394600	Weak transcription	Left Ventricle	heart
22	chr9:8384800-8389200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr9:8385200-8401400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr9:8385800-8387800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr9:8386000-8387200	Strong transcription	Fetal Lung	lung
26	chr9:8386200-8387000	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr9:8386200-8387800	Enhancers	Brain Angular Gyrus	brain
28	chr9:8386400-8387800	Enhancers	Brain Cingulate Gyrus	brain

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