Variant report

Variant	rs9898739
Chromosome Location	chr17:67001331-67001332
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12103819	1.00[EUR][1000 genomes]
rs16973446	1.00[EUR][1000 genomes]
rs16973452	1.00[EUR][1000 genomes]
rs16973503	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1807406	1.00[EUR][1000 genomes]
rs28439676	1.00[EUR][1000 genomes]
rs28443178	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28450507	1.00[EUR][1000 genomes]
rs28490038	1.00[EUR][1000 genomes]
rs4419114	1.00[EUR][1000 genomes]
rs60216404	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7213306	1.00[EUR][1000 genomes]
rs7217379	1.00[EUR][1000 genomes]
rs7222838	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8070045	1.00[EUR][1000 genomes]
rs8076776	1.00[EUR][1000 genomes]
rs8076973	1.00[EUR][1000 genomes]
rs9303000	1.00[EUR][1000 genomes]
rs9303001	1.00[EUR][1000 genomes]
rs960929	1.00[EUR][1000 genomes]
rs9892575	1.00[EUR][1000 genomes]
rs9893247	1.00[EUR][1000 genomes]
rs9893792	1.00[EUR][1000 genomes]
rs9894190	1.00[EUR][1000 genomes]
rs9894209	1.00[EUR][1000 genomes]
rs9894350	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9896584	1.00[EUR][1000 genomes]
rs9899675	0.82[AFR][1000 genomes]
rs9900030	1.00[EUR][1000 genomes]
rs9910875	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9911906	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv833526	chr17:66980758-67137034	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66977600-67001400	Weak transcription	Fetal Lung	lung
2	chr17:66977800-67027400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr17:66979400-67005400	Weak transcription	Psoas Muscle	Psoas
4	chr17:66980400-67009400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr17:66981400-67001400	Weak transcription	Fetal Muscle Leg	muscle
6	chr17:66988000-67001400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr17:66989600-67004200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr17:66989800-67011000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr17:66992200-67003000	Weak transcription	Ovary	ovary
10	chr17:67000000-67007400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr17:67000200-67044200	Weak transcription	Right Ventricle	heart
12	chr17:67001000-67001400	Active TSS	iPS-15b Cell Line	embryonic stem cell
13	chr17:67001200-67001400	Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr17:67001200-67001400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
15	chr17:67001200-67001400	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr17:67001200-67001600	Flanking Active TSS	H1 Cell Line	embryonic stem cell
17	chr17:67001200-67001600	Flanking Active TSS	H9 Cell Line	embryonic stem cell
18	chr17:67001200-67001600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
19	chr17:67001200-67001600	Active TSS	HUES64 Cell Line	embryonic stem cell
20	chr17:67001200-67001600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
21	chr17:67001200-67001600	Active TSS	iPS-20b Cell Line	embryonic stem cell
22	chr17:67001200-67001600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr17:67001200-67001800	Strong transcription	Left Ventricle	heart
24	chr17:67001200-67001800	Strong transcription	Skeletal Muscle Male	skeletal muscle
25	chr17:67001200-67006000	Strong transcription	Liver	Liver
26	chr17:67001200-67009400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr17:67001200-67014600	Strong transcription	Adipose Nuclei	Adipose

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