Variant report

Variant	rs9900407
Chromosome Location	chr17:15159279-15159280
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr17:15159094-15159306	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr17:15159107-15159327	MCF10A-Er-Src	breast:	n/a	n/a
3	FOSL2	chr17:15159103-15159457	SK-N-SH	brain:	n/a	n/a
4	FOS	chr17:15159131-15159291	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:15154649..15157419-chr17:15157540..15162043,4	MCF-7	breast:
2	chr17:15158560..15160723-chr17:15400595..15402410,2	K562	blood:

Variant related genes	Relation type
MIR4731	TF binding region
ENSG00000265110	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs7207667	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7212770	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9893338	1.00[EUR][1000 genomes]
rs9899940	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9901981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9901999	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066329	chr17:14983674-15294071	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv543212	chr17:14983674-15294071	Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	nsv492304	chr17:15043353-15611753	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv916652	chr17:15093600-15856310	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
5	nsv530760	chr17:15152791-15162532	Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv427990	chr17:15154329-15434020	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15135800-15160200	Weak transcription	Pancreas	Pancrea
2	chr17:15139800-15160200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr17:15146800-15160400	Strong transcription	A549	lung
4	chr17:15148200-15160400	Strong transcription	Fetal Stomach	stomach
5	chr17:15149800-15160200	Genic enhancers	Brain Hippocampus Middle	brain
6	chr17:15150800-15159400	Genic enhancers	Brain Cingulate Gyrus	brain
7	chr17:15150800-15160200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr17:15150800-15160200	Genic enhancers	Adipose Nuclei	Adipose
9	chr17:15151000-15160000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr17:15151400-15160000	Strong transcription	HUVEC	blood vessel
11	chr17:15151400-15160000	Weak transcription	K562	blood
12	chr17:15151400-15160200	Strong transcription	HSMM	muscle
13	chr17:15151400-15160200	Genic enhancers	NHDF-Ad	bronchial
14	chr17:15151800-15159400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr17:15151800-15160400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr17:15152000-15160200	Genic enhancers	Colon Smooth Muscle	Colon
17	chr17:15152200-15160400	Strong transcription	Fetal Intestine Large	intestine
18	chr17:15153800-15160200	Genic enhancers	Skeletal Muscle Male	skeletal muscle
19	chr17:15154400-15159800	Strong transcription	Cortex derived primary cultured neurospheres	brain
20	chr17:15154600-15160200	Weak transcription	Spleen	Spleen
21	chr17:15154800-15159400	Strong transcription	Fetal Lung	lung
22	chr17:15155200-15161600	Weak transcription	Esophagus	oesophagus
23	chr17:15155400-15160400	Strong transcription	Fetal Intestine Small	intestine
24	chr17:15156000-15160600	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr17:15156400-15160000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr17:15156800-15159400	Genic enhancers	Brain Angular Gyrus	brain
27	chr17:15156800-15159400	Strong transcription	Rectal Mucosa Donor 31	rectum
28	chr17:15157000-15160000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr17:15157200-15159400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr17:15157200-15159600	Strong transcription	Placenta	Placenta
31	chr17:15157200-15160400	Weak transcription	Colonic Mucosa	Colon
32	chr17:15157200-15161400	Weak transcription	Gastric	stomach
33	chr17:15157400-15160400	Weak transcription	Duodenum Mucosa	Duodenum
34	chr17:15157400-15162000	Weak transcription	Small Intestine	intestine
35	chr17:15157600-15159400	Genic enhancers	Right Ventricle	heart
36	chr17:15157600-15163200	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr17:15158000-15162000	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr17:15158400-15159600	Genic enhancers	Rectal Mucosa Donor 29	rectum
39	chr17:15158800-15159400	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr17:15158800-15159600	Genic enhancers	Brain Inferior Temporal Lobe	brain
41	chr17:15158800-15160200	Enhancers	Fetal Heart	heart
42	chr17:15158800-15160400	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain
43	chr17:15158800-15160400	Genic enhancers	Osteobl	bone
44	chr17:15158800-15161200	Enhancers	HMEC	breast
45	chr17:15158800-15161800	Strong transcription	Hela-S3	cervix
46	chr17:15159000-15159400	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr17:15159000-15159400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr17:15159000-15159400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr17:15159000-15159400	Genic enhancers	Lung	lung
50	chr17:15159000-15159400	Transcr. at gene 5' and 3'	Skeletal Muscle Female	skeletal muscle

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