Variant report

Variant	rs9900411
Chromosome Location	chr17:59404389-59404390
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:59077552..59079314-chr17:59402114..59404489,2	MCF-7	breast:
2	chr17:57917098..57919695-chr17:59402586..59404758,2	MCF-7	breast:
3	chr17:56708067..56710549-chr17:59401745..59404673,2	MCF-7	breast:
4	chr17:59402462..59404795-chr21:40750792..40753683,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000212195	Chromatin interaction
ENSG00000182093	Chromatin interaction
ENSG00000199004	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12325839	1.00[AMR][1000 genomes]
rs61309636	1.00[AMR][1000 genomes]
rs73991914	1.00[AMR][1000 genomes]
rs73991916	1.00[AMR][1000 genomes]
rs73991917	1.00[AMR][1000 genomes]
rs73991918	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065939	chr17:59283350-59517730	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	331 gene(s)	inside rSNPs	diseases
2	nsv833505	chr17:59323466-59518007	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	326 gene(s)	inside rSNPs	diseases
3	nsv833506	chr17:59362377-59562984	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	334 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59388800-59444200	Weak transcription	Primary T cells from cord blood	blood
2	chr17:59389600-59412400	Weak transcription	Gastric	stomach
3	chr17:59391400-59412400	Weak transcription	Pancreas	Pancrea
4	chr17:59391800-59409200	Weak transcription	Esophagus	oesophagus
5	chr17:59399200-59409600	Weak transcription	Brain Angular Gyrus	brain
6	chr17:59400000-59404400	Enhancers	Osteobl	bone
7	chr17:59401400-59408200	Weak transcription	Right Ventricle	heart
8	chr17:59401400-59412200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr17:59401800-59413000	Weak transcription	Stomach Smooth Muscle	stomach
10	chr17:59402800-59408000	Weak transcription	Lung	lung
11	chr17:59402800-59409200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr17:59402800-59414600	Weak transcription	Ovary	ovary
13	chr17:59403000-59404400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr17:59403000-59408200	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr17:59403000-59408400	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr17:59403200-59408000	Weak transcription	Left Ventricle	heart
17	chr17:59403200-59408800	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr17:59403200-59409600	Weak transcription	Brain Cingulate Gyrus	brain
19	chr17:59403200-59414600	Weak transcription	Adipose Nuclei	Adipose
20	chr17:59403200-59416600	Weak transcription	Spleen	Spleen
21	chr17:59403400-59409200	Weak transcription	Brain Substantia Nigra	brain
22	chr17:59403400-59411400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr17:59403600-59408200	Weak transcription	Brain Hippocampus Middle	brain
24	chr17:59403600-59413200	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr17:59403800-59405200	Weak transcription	HepG2	liver
26	chr17:59403800-59408200	Weak transcription	Right Atrium	heart
27	chr17:59403800-59412200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr17:59404000-59407000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr17:59404000-59408600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr17:59404000-59409200	Weak transcription	Brain Anterior Caudate	brain
31	chr17:59404000-59410600	Weak transcription	NH-A	brain
32	chr17:59404000-59412000	Weak transcription	Fetal Lung	lung
33	chr17:59404000-59413400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr17:59404200-59408200	Weak transcription	NHDF-Ad	bronchial
35	chr17:59404200-59408400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr17:59404200-59408800	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr17:59404200-59412000	Weak transcription	NHLF	lung
38	chr17:59404200-59412200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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