Variant report

Variant	rs9900433
Chromosome Location	chr17:67064118-67064119
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:67062679..67065197-chr17:67076968..67078802,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs28413007	1.00[AMR][1000 genomes]
rs28558647	1.00[AMR][1000 genomes]
rs28685601	1.00[AMR][1000 genomes]
rs7208425	1.00[AMR][1000 genomes]
rs9906097	1.00[AMR][1000 genomes]
rs9906195	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv833526	chr17:66980758-67137034	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1066998	chr17:67060038-67090475	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv908705	chr17:67061898-67112456	Weak transcription Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67041400-67072600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr17:67053800-67066800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr17:67056200-67075200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr17:67057800-67077600	Weak transcription	Fetal Brain Male	brain
5	chr17:67058200-67065400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr17:67058200-67065400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr17:67058200-67066600	Weak transcription	Fetal Lung	lung
8	chr17:67058400-67071600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr17:67058800-67065400	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr17:67059600-67069600	Weak transcription	Adipose Nuclei	Adipose
11	chr17:67060000-67065600	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr17:67060000-67070000	Weak transcription	Ovary	ovary
13	chr17:67060800-67065400	Weak transcription	NHDF-Ad	bronchial
14	chr17:67062800-67065400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr17:67062800-67066600	Weak transcription	Fetal Thymus	thymus
16	chr17:67062800-67066800	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr17:67062800-67075800	Weak transcription	Left Ventricle	heart
18	chr17:67063000-67064600	Enhancers	Primary hematopoietic stem cells	blood
19	chr17:67063000-67065200	Enhancers	Primary T cells from cord blood	blood
20	chr17:67063000-67065400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr17:67063000-67066600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr17:67063200-67065000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr17:67063200-67066600	Weak transcription	Primary B cells from peripheral blood	blood
24	chr17:67063200-67067000	Weak transcription	Dnd41	blood
25	chr17:67063200-67067400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr17:67063400-67065200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr17:67063400-67070200	Enhancers	HepG2	liver
28	chr17:67063600-67064200	Enhancers	K562	blood
29	chr17:67063600-67064800	Weak transcription	Fetal Kidney	kidney
30	chr17:67063600-67066400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr17:67063600-67070600	Weak transcription	Liver	Liver
32	chr17:67063800-67065000	Enhancers	Monocytes-CD14+_RO01746	blood
33	chr17:67064000-67064200	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr17:67064000-67065800	Enhancers	Stomach Mucosa	stomach

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