Variant report

Variant	rs990159
Chromosome Location	chr3:87051445-87051446
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1025631	0.83[CEU][hapmap];0.81[TSI][hapmap]
rs12152340	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1370040	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1370042	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1436647	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1821750	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1836918	0.89[CEU][hapmap];0.95[JPT][hapmap];0.92[MEX][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1898274	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2043663	0.82[CEU][hapmap];0.84[MEX][hapmap];0.81[TSI][hapmap]
rs2118078	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2262594	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2262595	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2575775	0.94[CEU][hapmap];0.88[MEX][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes]
rs2575780	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2575782	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2575783	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2575784	0.86[EUR][1000 genomes]
rs2575794	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2575799	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2575800	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2660767	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2660769	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2660772	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2660773	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2660774	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2660777	0.87[CEU][hapmap]
rs2660779	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2660796	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2660797	0.85[EUR][1000 genomes]
rs2660798	0.94[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2660799	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534036	chr3:86967129-87283600	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1000548	chr3:87034157-87331360	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:87051200-87051600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:87051200-87051600	Enhancers	Placenta	Placenta

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