Variant report

Variant	rs9903674
Chromosome Location	chr17:15418770-15418771
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11649792	0.81[EUR][1000 genomes]
rs11651787	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11653403	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1465251	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1465252	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2052022	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28411195	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28733269	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3865257	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4365325	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4572441	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55749051	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62069953	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62072569	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62072571	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62072578	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62072579	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs716389	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7211982	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7215138	0.80[ASN][1000 genomes]
rs8076852	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9899922	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9901383	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9906036	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9908651	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9911005	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9911822	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9913509	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492304	chr17:15043353-15611753	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv916652	chr17:15093600-15856310	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv427990	chr17:15154329-15434020	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1055677	chr17:15294011-15561130	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv1059056	chr17:15294011-15856861	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
6	nsv1058286	chr17:15315763-15561130	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	nsv543213	chr17:15315763-15561130	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15383200-15419600	Weak transcription	Thymus	Thymus
2	chr17:15383400-15455000	Weak transcription	Gastric	stomach
3	chr17:15393400-15451200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr17:15394800-15450800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr17:15396800-15420400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr17:15401200-15420400	Weak transcription	Psoas Muscle	Psoas
7	chr17:15405400-15419000	Weak transcription	Liver	Liver
8	chr17:15406200-15420600	Weak transcription	Colonic Mucosa	Colon
9	chr17:15406600-15419000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr17:15406600-15419800	Weak transcription	NHEK	skin
11	chr17:15406600-15422800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr17:15406600-15428800	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr17:15406800-15419000	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr17:15406800-15419200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr17:15406800-15419400	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr17:15406800-15419400	Weak transcription	Fetal Kidney	kidney
17	chr17:15406800-15419600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr17:15406800-15420200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr17:15406800-15421800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr17:15406800-15422000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr17:15406800-15450600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr17:15407000-15419000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr17:15407000-15422400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr17:15410200-15426200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr17:15410800-15429000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr17:15413000-15419200	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr17:15413200-15419400	Weak transcription	Lung	lung
28	chr17:15413200-15420000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr17:15413800-15418800	Weak transcription	Adipose Nuclei	Adipose
30	chr17:15413800-15428000	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr17:15414000-15429000	Weak transcription	Fetal Heart	heart
32	chr17:15414000-15430200	Weak transcription	Right Ventricle	heart
33	chr17:15414400-15418800	Enhancers	Brain Cingulate Gyrus	brain
34	chr17:15414400-15421000	Weak transcription	Left Ventricle	heart
35	chr17:15414600-15422200	Weak transcription	Primary B cells from peripheral blood	blood
36	chr17:15414600-15428000	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr17:15415200-15422400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
38	chr17:15415200-15422600	Strong transcription	HUES6 Cell Line	embryonic stem cell
39	chr17:15415400-15420000	Strong transcription	Primary T helper cells fromperipheralblood	blood
40	chr17:15415400-15422400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr17:15416200-15419000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr17:15416200-15420000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr17:15416200-15466000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr17:15416400-15420400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr17:15416400-15421800	Strong transcription	Hela-S3	cervix
46	chr17:15416800-15419600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr17:15416800-15420400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr17:15417000-15420000	Strong transcription	Primary hematopoietic stem cells	blood
49	chr17:15417000-15420400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr17:15417000-15420400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood

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