Variant report

Variant	rs9904252
Chromosome Location	chr17:16450762-16450763
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TRPV2-5	chr17:16449417-16451935	NONHSAT145982

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10491106	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16959797	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16959800	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16959821	0.84[AMR][1000 genomes]
rs16959828	0.84[AMR][1000 genomes]
rs16959832	0.91[ASW][hapmap]
rs16959834	0.83[ASW][hapmap]
rs28414896	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57442832	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs57502248	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6502509	0.91[ASW][hapmap]
rs6502510	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7211050	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7211497	0.91[ASW][hapmap]
rs7213263	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7214188	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7214679	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7217433	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.87[TSI][hapmap];0.98[EUR][1000 genomes]
rs7221221	1.00[CEU][hapmap];0.85[MEX][hapmap];0.88[TSI][hapmap];0.98[EUR][1000 genomes]
rs7221367	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs7222543	0.84[AMR][1000 genomes]
rs7224723	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73982005	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8066499	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8066627	0.96[EUR][1000 genomes]
rs8077233	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9889318	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9889728	0.89[AMR][1000 genomes]
rs9892027	0.92[EUR][1000 genomes]
rs9893954	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9904631	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs9911849	0.92[EUR][1000 genomes]
rs9915163	0.81[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934185	chr17:15552960-16551197	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	190 gene(s)	inside rSNPs	diseases
2	esv3330182	chr17:15652014-16569534	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
3	esv3446844	chr17:15654843-16572246	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
4	nsv1063459	chr17:15804228-16543593	Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
5	nsv1063764	chr17:16171649-16662914	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	120 gene(s)	inside rSNPs	diseases
6	nsv1061463	chr17:16245878-16490691	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	99 gene(s)	inside rSNPs	diseases
7	nsv543216	chr17:16245878-16490691	Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	99 gene(s)	inside rSNPs	diseases
8	nsv428668	chr17:16265210-16455285	Weak transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	89 gene(s)	inside rSNPs	diseases
9	nsv1058448	chr17:16389870-16926287	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16440200-16456000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr17:16447400-16463200	ZNF genes & repeats	Liver	Liver

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