Variant report

Variant	rs9904391
Chromosome Location	chr17:45702631-45702632
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:45700634..45703555-chr17:45708176..45711349,3	MCF-7	breast:
2	chr17:45700978..45703641-chr17:45726585..45728583,2	K562	blood:
3	chr17:45694884..45697521-chr17:45701270..45704059,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108424	Chromatin interaction
ENSG00000263766	Chromatin interaction
ENSG00000141279	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs28421042	1.00[ASW][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9674625	1.00[AMR][1000 genomes]
rs9909843	1.00[AMR][1000 genomes]
rs9909975	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062983	chr17:45030095-45789543	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv525267	chr17:45451894-45735706	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	esv1811231	chr17:45520374-45764956	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	esv1813964	chr17:45520374-45764956	Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	esv2758458	chr17:45520374-45764956	Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	esv2758693	chr17:45520374-45764956	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv428344	chr17:45520374-45764956	Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:45663800-45702800	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr17:45667400-45718200	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr17:45670000-45703000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr17:45672400-45704200	Strong transcription	Fetal Muscle Trunk	muscle
5	chr17:45672600-45703000	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr17:45686800-45703400	Strong transcription	Fetal Stomach	stomach
7	chr17:45688800-45703000	Strong transcription	Placenta	Placenta
8	chr17:45689000-45703000	Strong transcription	Fetal Thymus	thymus
9	chr17:45689200-45707800	Weak transcription	Gastric	stomach
10	chr17:45691800-45716600	Weak transcription	Right Ventricle	heart
11	chr17:45692800-45714600	Weak transcription	Aorta	Aorta
12	chr17:45694600-45702800	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr17:45695400-45704000	Strong transcription	GM12878-XiMat	blood
14	chr17:45696600-45709200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr17:45696600-45713600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr17:45696600-45726000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr17:45696800-45707200	Weak transcription	Ovary	ovary
18	chr17:45696800-45726200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr17:45697000-45725800	Weak transcription	Brain Substantia Nigra	brain
20	chr17:45697200-45703600	Weak transcription	Fetal Brain Male	brain
21	chr17:45697200-45713400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr17:45697200-45713600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr17:45697200-45726000	Weak transcription	Brain Angular Gyrus	brain
24	chr17:45698000-45716000	Weak transcription	Psoas Muscle	Psoas
25	chr17:45698600-45714400	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr17:45698800-45702800	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr17:45699400-45707200	Weak transcription	Pancreas	Pancrea
28	chr17:45699400-45707200	Weak transcription	Right Atrium	heart
29	chr17:45699400-45726000	Weak transcription	Brain Anterior Caudate	brain
30	chr17:45699400-45726200	Weak transcription	Fetal Kidney	kidney
31	chr17:45699600-45713800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr17:45699800-45707200	Weak transcription	Stomach Mucosa	stomach
33	chr17:45699800-45707800	Weak transcription	K562	blood
34	chr17:45699800-45712600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr17:45699800-45713400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr17:45699800-45717600	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr17:45700000-45703000	Weak transcription	Hela-S3	cervix
38	chr17:45700000-45704200	Strong transcription	Fetal Muscle Leg	muscle
39	chr17:45700000-45707200	Weak transcription	Fetal Lung	lung
40	chr17:45700000-45710000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr17:45700000-45714000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr17:45700000-45725600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr17:45700000-45725800	Weak transcription	Spleen	Spleen
44	chr17:45700200-45707400	Weak transcription	Fetal Heart	heart
45	chr17:45700200-45708000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr17:45700200-45713000	Weak transcription	Brain Germinal Matrix	brain
47	chr17:45700400-45702800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr17:45700400-45702800	Strong transcription	NHDF-Ad	bronchial
49	chr17:45700400-45703000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr17:45700400-45703800	Weak transcription	Small Intestine	intestine

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