Variant report

Variant	rs9905091
Chromosome Location	chr17:45806494-45806495
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs9891492	1.00[AMR][1000 genomes]
rs9900629	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498122	chr17:45763853-46064327	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv908571	chr17:45765249-45821510	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	17 gene(s)	inside rSNPs	diseases
3	nsv2071	chr17:45801503-45844229	Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:45790000-45810400	Weak transcription	Right Atrium	heart
2	chr17:45799200-45810800	Weak transcription	Gastric	stomach
3	chr17:45801200-45809800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr17:45804800-45808000	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr17:45804800-45809200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr17:45805000-45806800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr17:45805000-45808200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr17:45805200-45808000	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr17:45805200-45809400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr17:45805200-45809600	Weak transcription	Spleen	Spleen
11	chr17:45805600-45806800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
12	chr17:45805600-45809600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr17:45806200-45806600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr17:45806200-45807000	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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