Variant report

Variant	rs9905506
Chromosome Location	chr17:38253469-38253470
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:38179413..38181417-chr17:38251957..38254086,2	MCF-7	breast:
2	chr17:38252309..38254570-chr17:38334078..38336358,2	MCF-7	breast:
3	chr17:38217797..38220127-chr17:38251239..38253842,2	MCF-7	breast:
4	chr17:38225724..38230590-chr17:38252636..38256998,6	K562	blood:
5	chr17:38252517..38259251-chr17:38276179..38282890,16	MCF-7	breast:
6	chr17:38209724..38212564-chr17:38253281..38256740,3	K562	blood:
7	chr17:38224768..38231268-chr17:38252636..38258126,7	K562	blood:
8	chr17:38107709..38109342-chr17:38252827..38255550,2	K562	blood:
9	chr17:38182380..38184937-chr17:38252764..38255458,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000188895	Chromatin interaction
ENSG00000238793	Chromatin interaction
ENSG00000008838	Chromatin interaction
ENSG00000108352	Chromatin interaction
ENSG00000126351	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9894283	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv908221	chr17:38216522-38289003	Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv833444	chr17:38242823-38437280	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38239800-38253600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr17:38243800-38254800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr17:38244600-38253800	Genic enhancers	Fetal Muscle Trunk	muscle
4	chr17:38245000-38254200	Weak transcription	Fetal Kidney	kidney
5	chr17:38245400-38254000	Genic enhancers	Right Ventricle	heart
6	chr17:38245400-38254800	Genic enhancers	Fetal Muscle Leg	muscle
7	chr17:38247000-38254400	Strong transcription	Cortex derived primary cultured neurospheres	brain
8	chr17:38248200-38254400	Genic enhancers	Fetal Thymus	thymus
9	chr17:38248600-38253600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr17:38248600-38254400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr17:38249000-38253800	Strong transcription	Dnd41	blood
12	chr17:38249000-38255200	Transcr. at gene 5' and 3'	Skeletal Muscle Male	skeletal muscle
13	chr17:38249200-38253600	Strong transcription	H1 Cell Line	embryonic stem cell
14	chr17:38249200-38253600	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr17:38249200-38253600	Genic enhancers	Left Ventricle	heart
16	chr17:38249200-38253800	Genic enhancers	Spleen	Spleen
17	chr17:38249200-38254200	Enhancers	Right Atrium	heart
18	chr17:38249400-38253600	Genic enhancers	Pancreas	Pancrea
19	chr17:38249400-38253600	Strong transcription	HepG2	liver
20	chr17:38249400-38253800	Strong transcription	iPS-15b Cell Line	embryonic stem cell
21	chr17:38249400-38253800	Strong transcription	K562	blood
22	chr17:38249400-38254000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr17:38249400-38254000	Strong transcription	A549	lung
24	chr17:38249400-38254400	Strong transcription	HUES6 Cell Line	embryonic stem cell
25	chr17:38249400-38254600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr17:38249600-38253800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr17:38249600-38253800	Strong transcription	HUES48 Cell Line	embryonic stem cell
28	chr17:38249600-38253800	Genic enhancers	Liver	Liver
29	chr17:38249600-38254000	Genic enhancers	Gastric	stomach
30	chr17:38249600-38254000	Genic enhancers	Stomach Mucosa	stomach
31	chr17:38249800-38254200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr17:38250000-38253800	Strong transcription	Osteobl	bone
33	chr17:38250400-38254200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr17:38250400-38254400	Weak transcription	Fetal Lung	lung
35	chr17:38250400-38254600	Weak transcription	Brain Germinal Matrix	brain
36	chr17:38250600-38254400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr17:38250600-38254600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr17:38250800-38253800	Weak transcription	Ovary	ovary
39	chr17:38250800-38254200	Weak transcription	NH-A	brain
40	chr17:38250800-38254600	Enhancers	Fetal Heart	heart
41	chr17:38251200-38253600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr17:38251200-38253600	Genic enhancers	Thymus	Thymus
43	chr17:38251200-38254600	Enhancers	Primary neutrophils fromperipheralblood	blood
44	chr17:38251200-38255600	Enhancers	Primary monocytes fromperipheralblood	blood
45	chr17:38251400-38254400	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
46	chr17:38251600-38253600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr17:38251600-38253600	Genic enhancers	Placenta	Placenta
48	chr17:38251600-38253600	Genic enhancers	Sigmoid Colon	Sigmoid Colon
49	chr17:38251600-38254000	Genic enhancers	Primary hematopoietic stem cells	blood
50	chr17:38251600-38254000	Genic enhancers	Fetal Intestine Small	intestine

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