Variant report

Variant	rs9905615
Chromosome Location	chr17:17149082-17149083
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:17139773..17141689-chr17:17147238..17149246,2	MCF-7	breast:
2	chr17:17146996..17149508-chr17:17150450..17152248,2	K562	blood:
3	chr17:17147939..17150281-chr17:17183069..17185627,2	K562	blood:
4	chr17:17139635..17142575-chr17:17144486..17149716,4	K562	blood:

Variant related genes	Relation type
ENSG00000264187	Chromatin interaction
ENSG00000141030	Chromatin interaction
ENSG00000154803	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11867522	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11869283	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3744123	0.85[AMR][1000 genomes]
rs57800482	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61750032	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7215207	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8064533	1.00[AMR][1000 genomes]
rs8075194	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9890700	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9891435	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9891561	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9900416	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9908943	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9910071	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833380	chr17:17088416-17241206	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1065811	chr17:17104760-17225204	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv833382	chr17:17124329-17305683	Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv469777	chr17:17127385-17272698	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv482546	chr17:17127385-17272698	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17141400-17150400	Weak transcription	Aorta	Aorta
2	chr17:17141600-17149200	Weak transcription	Brain Substantia Nigra	brain
3	chr17:17141600-17149200	Weak transcription	Right Ventricle	heart
4	chr17:17141600-17149200	Weak transcription	Spleen	Spleen
5	chr17:17141600-17149200	Weak transcription	HSMMtube	muscle
6	chr17:17141600-17149600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr17:17141600-17149800	Weak transcription	Esophagus	oesophagus
8	chr17:17141600-17149800	Weak transcription	Fetal Kidney	kidney
9	chr17:17141600-17150600	Weak transcription	Brain Angular Gyrus	brain
10	chr17:17141600-17161200	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr17:17141800-17149200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr17:17141800-17149200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr17:17141800-17149200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr17:17141800-17149200	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr17:17141800-17149200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr17:17141800-17149200	Weak transcription	Rectal Smooth Muscle	rectum
17	chr17:17141800-17149200	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr17:17141800-17149200	Weak transcription	Stomach Smooth Muscle	stomach
19	chr17:17141800-17149200	Weak transcription	NH-A	brain
20	chr17:17141800-17149200	Weak transcription	NHDF-Ad	bronchial
21	chr17:17141800-17149200	Weak transcription	NHEK	skin
22	chr17:17141800-17149400	Weak transcription	NHLF	lung
23	chr17:17141800-17149600	Weak transcription	Small Intestine	intestine
24	chr17:17141800-17149800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr17:17141800-17150000	Weak transcription	Primary T cells from cord blood	blood
26	chr17:17141800-17150000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr17:17141800-17150200	Weak transcription	Brain Cingulate Gyrus	brain
28	chr17:17141800-17150200	Weak transcription	Fetal Lung	lung
29	chr17:17141800-17150200	Weak transcription	Pancreas	Pancrea
30	chr17:17141800-17150200	Weak transcription	HMEC	breast
31	chr17:17141800-17150200	Weak transcription	HSMM	muscle
32	chr17:17141800-17150400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr17:17141800-17150400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr17:17141800-17150800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr17:17141800-17155600	Weak transcription	Psoas Muscle	Psoas
36	chr17:17141800-17156600	Weak transcription	Fetal Heart	heart
37	chr17:17141800-17162200	Weak transcription	Stomach Mucosa	stomach
38	chr17:17142000-17149200	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr17:17142000-17149200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr17:17142000-17149200	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr17:17142000-17149200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr17:17142000-17149200	Weak transcription	Colonic Mucosa	Colon
43	chr17:17142000-17149400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr17:17142000-17149400	Weak transcription	Placenta	Placenta
45	chr17:17142000-17149400	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr17:17142000-17149400	Weak transcription	Thymus	Thymus
47	chr17:17142000-17149800	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr17:17142000-17150200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr17:17142000-17150200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr17:17142000-17150200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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