Variant report

Variant	rs990628
Chromosome Location	chr21:17832871-17832872
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2823827	1.00[CHD][hapmap]
rs2896759	1.00[CHD][hapmap]
rs8131413	1.00[CHD][hapmap]
rs9978348	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064857	chr21:17628760-18533131	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	345 gene(s)	inside rSNPs	diseases
2	nsv544382	chr21:17628760-18533131	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	345 gene(s)	inside rSNPs	diseases
3	nsv913416	chr21:17728224-17863882	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17828600-17833400	Weak transcription	Esophagus	oesophagus
2	chr21:17828800-17833600	Weak transcription	Fetal Muscle Leg	muscle
3	chr21:17828800-17834600	Weak transcription	Left Ventricle	heart
4	chr21:17828800-17835000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr21:17829000-17843600	Weak transcription	Brain Hippocampus Middle	brain
6	chr21:17829600-17835000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr21:17829600-17835600	Weak transcription	Fetal Brain Female	brain
8	chr21:17830000-17833400	Weak transcription	Fetal Heart	heart
9	chr21:17830200-17835000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr21:17830200-17835200	Weak transcription	Brain Anterior Caudate	brain
11	chr21:17830200-17837200	Weak transcription	Ovary	ovary
12	chr21:17830200-17837600	Weak transcription	Right Ventricle	heart
13	chr21:17830200-17842200	Weak transcription	Psoas Muscle	Psoas
14	chr21:17830400-17845600	Weak transcription	Right Atrium	heart
15	chr21:17832000-17835400	Weak transcription	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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