Variant report

Variant	rs9909569
Chromosome Location	chr17:45258818-45258819
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:45213650..45214313-chr17:45258453..45258970,2	MCF-7	breast:
2	chr17:45256968..45259015-chr17:45265544..45267226,2	MCF-7	breast:
3	chr17:45257479..45260473-chr2:133018355..133021074,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RPRML-7	chr17:45258648-45259003	NONHSAT054290

Variant related genes	Relation type
ENSG00000233786	Chromatin interaction
ENSG00000004897	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062983	chr17:45030095-45789543	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	esv3584	chr17:45246216-45265642	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3790	chr17:45247093-45261518	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv3344584	chr17:45247298-45258989	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv6873	chr17:45247370-45266575	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	esv3438623	chr17:45249255-45266618	Genic enhancers Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	esv3437669	chr17:45249306-45259022	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	esv8330	chr17:45249307-45266621	Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	esv3314728	chr17:45249324-45258982	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	esv3314730	chr17:45249324-45258982	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	esv3431737	chr17:45249325-45259054	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	esv3374428	chr17:45249343-45266580	Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
13	esv3362151	chr17:45249372-45258977	ZNF genes & repeats Strong transcription Genic enhancers Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
14	esv3450592	chr17:45249392-45258947	Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
15	nsv960117	chr17:45257797-45260714	Strong transcription ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
16	esv3387537	chr17:45258496-45259021	ZNF genes & repeats Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
17	esv3408902	chr17:45258640-45258975	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:45251200-45259200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr17:45251200-45260600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr17:45252600-45259200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr17:45253200-45265200	Weak transcription	Brain Germinal Matrix	brain
5	chr17:45254200-45259200	Strong transcription	Osteobl	bone
6	chr17:45255200-45263200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr17:45257000-45265600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr17:45257600-45259400	Genic enhancers	HepG2	liver
9	chr17:45258200-45259000	Weak transcription	Fetal Brain Female	brain
10	chr17:45258600-45259400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr17:45258800-45259000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
12	chr17:45258800-45259000	Genic enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr17:45258800-45259000	Flanking Bivalent TSS/Enh	Fetal Heart	heart
14	chr17:45258800-45259200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
15	chr17:45258800-45259200	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr17:45258800-45259200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr17:45258800-45259200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr17:45258800-45259200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr17:45258800-45259200	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
20	chr17:45258800-45259200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr17:45258800-45259200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr17:45258800-45259200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr17:45258800-45259200	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr17:45258800-45259200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr17:45258800-45259200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
26	chr17:45258800-45259200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
27	chr17:45258800-45259200	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr17:45258800-45259200	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
29	chr17:45258800-45259200	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
30	chr17:45258800-45259200	Flanking Bivalent TSS/Enh	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr17:45258800-45259200	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr17:45258800-45259200	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr17:45258800-45259200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr17:45258800-45259200	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr17:45258800-45259200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
36	chr17:45258800-45259200	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr17:45258800-45259200	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
38	chr17:45258800-45259200	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
39	chr17:45258800-45259200	ZNF genes & repeats	Primary B cells from cord blood	blood
40	chr17:45258800-45259200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
41	chr17:45258800-45259200	ZNF genes & repeats	Primary T cells from cord blood	blood
42	chr17:45258800-45259200	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
43	chr17:45258800-45259200	Enhancers	Primary hematopoietic stem cells	blood
44	chr17:45258800-45259200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
45	chr17:45258800-45259200	Flanking Bivalent TSS/Enh	Primary T helper memory cells from peripheral blood 2	blood
46	chr17:45258800-45259200	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
47	chr17:45258800-45259200	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
48	chr17:45258800-45259200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
49	chr17:45258800-45259200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
50	chr17:45258800-45259200	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--

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