Variant report

Variant	rs9909742
Chromosome Location	chr17:59551105-59551106
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	PML	chr17:59549248-59559234	MCF-7	breast:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:56707422..56709385-chr17:59549983..59551952,2	MCF-7	breast:
2	chr1:149222378..149225503-chr17:59550904..59555232,4	MCF-7	breast:
3	chr17:57918101..57920862-chr17:59548801..59552375,3	MCF-7	breast:
4	chr17:59546893..59548581-chr17:59550054..59552015,2	K562	blood:
5	chr17:59550595..59551138-chr17:59651845..59652419,2	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
TBX4	TF binding region
ENSG00000212195	Chromatin interaction
ENSG00000206737	Chromatin interaction
ENSG00000199004	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833506	chr17:59362377-59562984	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	334 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59543200-59564800	Genic enhancers	NHLF	lung
2	chr17:59545600-59563000	Weak transcription	Lung	lung
3	chr17:59546400-59551200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr17:59546400-59551200	Weak transcription	NHDF-Ad	bronchial
5	chr17:59546600-59552200	Weak transcription	Placenta	Placenta
6	chr17:59548200-59563400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr17:59548400-59551800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr17:59548400-59552400	Weak transcription	HepG2	liver
9	chr17:59548600-59554000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr17:59548800-59552600	Weak transcription	Fetal Intestine Large	intestine
11	chr17:59550400-59551600	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr17:59550600-59554800	Genic enhancers	Fetal Lung	lung
13	chr17:59550800-59551600	Enhancers	HMEC	breast
14	chr17:59550800-59551800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr17:59550800-59552800	Genic enhancers	Fetal Muscle Leg	muscle
16	chr17:59550800-59553000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr17:59551000-59551400	Enhancers	Fetal Muscle Trunk	muscle
18	chr17:59551000-59553600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr17:59551000-59554400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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