Variant report

Variant	rs9911821
Chromosome Location	chr17:45209217-45209218
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:45207790..45209318-chr17:45237237..45238826,2	K562	blood:
2	chr17:45207192..45209453-chr17:45214341..45217324,3	K562	blood:

Variant related genes	Relation type
ENSG00000004897	Chromatin interaction
ENSG00000239291	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062983	chr17:45030095-45789543	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv833467	chr17:45063935-45252624	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	esv3332795	chr17:45116212-45209297	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	esv3386521	chr17:45116232-45209267	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	esv2760450	chr17:45130777-45225222	Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	nsv908563	chr17:45158537-45230311	ZNF genes & repeats Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv962456	chr17:45163689-45212872	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	esv3435421	chr17:45208993-45209578	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv1204204	chr17:45209216-45209217	Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:45192400-45212800	Weak transcription	Gastric	stomach
2	chr17:45193200-45212800	Weak transcription	Aorta	Aorta
3	chr17:45194000-45209800	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr17:45194200-45209600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr17:45194200-45209600	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr17:45194200-45209800	Strong transcription	Dnd41	blood
7	chr17:45194800-45212800	Weak transcription	Colonic Mucosa	Colon
8	chr17:45194800-45214400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr17:45194800-45234200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr17:45195400-45209600	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr17:45195400-45209800	Strong transcription	Fetal Thymus	thymus
12	chr17:45195600-45209400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr17:45195800-45212800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr17:45196000-45209600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr17:45196000-45209800	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr17:45196200-45212800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr17:45196400-45212800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr17:45196400-45212800	Weak transcription	Ovary	ovary
19	chr17:45196600-45213000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr17:45196600-45213000	Weak transcription	Esophagus	oesophagus
21	chr17:45197200-45209600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr17:45197400-45209800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr17:45197600-45209600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr17:45197800-45209400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr17:45197800-45210000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr17:45198000-45209600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr17:45198000-45212000	Strong transcription	Fetal Stomach	stomach
28	chr17:45198200-45210200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr17:45198200-45212800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr17:45198200-45212800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr17:45198200-45212800	Weak transcription	Brain Angular Gyrus	brain
32	chr17:45198400-45212800	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr17:45198600-45209800	Strong transcription	A549	lung
34	chr17:45198600-45212800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr17:45198800-45209800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr17:45198800-45212800	Weak transcription	Fetal Heart	heart
37	chr17:45199000-45211800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr17:45199000-45212800	Weak transcription	Pancreas	Pancrea
39	chr17:45199200-45209600	Strong transcription	HUES64 Cell Line	embryonic stem cell
40	chr17:45199400-45212800	Weak transcription	Psoas Muscle	Psoas
41	chr17:45199600-45212800	Weak transcription	Small Intestine	intestine
42	chr17:45199800-45212800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr17:45200000-45212800	Weak transcription	Brain Cingulate Gyrus	brain
44	chr17:45200000-45212800	Weak transcription	NHEK	skin
45	chr17:45200600-45212800	Weak transcription	Fetal Brain Male	brain
46	chr17:45201800-45212800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr17:45202000-45209600	Strong transcription	Fetal Intestine Large	intestine
48	chr17:45202200-45209400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr17:45202800-45209600	Strong transcription	Liver	Liver
50	chr17:45203000-45209800	Strong transcription	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links