Variant report

Variant	rs9915074
Chromosome Location	chr17:17261224-17261225
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs67773570	0.80[EUR][1000 genomes]
rs9909800	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833382	chr17:17124329-17305683	Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv469777	chr17:17127385-17272698	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv482546	chr17:17127385-17272698	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv1061186	chr17:17200427-17314406	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17250800-17265400	Weak transcription	Fetal Brain Female	brain
2	chr17:17256000-17264600	Weak transcription	NHDF-Ad	bronchial
3	chr17:17256000-17265000	Weak transcription	Left Ventricle	heart
4	chr17:17258400-17262000	Enhancers	Fetal Thymus	thymus
5	chr17:17258800-17265600	Weak transcription	Right Ventricle	heart
6	chr17:17259200-17265000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr17:17259800-17261600	Weak transcription	Fetal Intestine Small	intestine
8	chr17:17259800-17265000	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr17:17259800-17266200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr17:17260000-17261800	Weak transcription	Adipose Nuclei	Adipose
11	chr17:17260200-17261600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr17:17260400-17261800	Weak transcription	Hela-S3	cervix
13	chr17:17260400-17266600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr17:17261200-17262000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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