Variant report

Variant	rs9915956
Chromosome Location	chr17:19627754-19627755
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:19551445..19552984-chr17:19627391..19629218,2	MCF-7	breast:
2	chr11:67380566..67382466-chr17:19627123..19628760,2	MCF-7	breast:
3	chr17:19627605..19629507-chr17:19658894..19661026,2	MCF-7	breast:
4	chr17:19551299..19553745-chr17:19626814..19628923,2	MCF-7	breast:
5	chr17:19625321..19633420-chr17:19643892..19652817,11	MCF-7	breast:
6	chr17:19624830..19631833-chr17:19654160..19660410,12	MCF-7	breast:
7	chr17:19626221..19628262-chr17:19634519..19636560,2	MCF-7	breast:
8	chr17:19617480..19620219-chr17:19627311..19629602,2	MCF-7	breast:
9	chr17:19626307..19628911-chr8:125486241..125488488,2	MCF-7	breast:
10	chr17:19627403..19631543-chr17:19639531..19642900,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000180638	Chromatin interaction
ENSG00000264932	Chromatin interaction
ENSG00000072210	Chromatin interaction
ENSG00000230607	Chromatin interaction
ENSG00000170881	Chromatin interaction
ENSG00000264785	Chromatin interaction
ENSG00000245149	Chromatin interaction
ENSG00000231793	Chromatin interaction
ENSG00000108602	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12325921	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16960382	1.00[AMR][1000 genomes]
rs16960386	1.00[AMR][1000 genomes]
rs28552545	1.00[AMR][1000 genomes]
rs57629792	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7213030	1.00[AMR][1000 genomes]
rs7213388	0.81[AFR][1000 genomes]
rs9901772	0.84[AFR][1000 genomes]
rs9901778	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482827	chr17:19456848-19645771	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv1062853	chr17:19547912-20206601	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	nsv1063892	chr17:19564634-19808485	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	nsv907866	chr17:19582533-19697976	Weak transcription Genic enhancers Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	esv1807724	chr17:19597423-19656009	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv907867	chr17:19603060-19697976	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
7	esv1793043	chr17:19604821-19670329	Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	nsv526290	chr17:19613357-19651482	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
9	nsv457704	chr17:19620477-19663747	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
10	nsv470582	chr17:19620477-19663747	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
11	nsv574580	chr17:19620477-19663747	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
12	esv3406151	chr17:19626085-19628158	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:19617600-19635400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr17:19619800-19627800	Enhancers	Fetal Intestine Large	intestine
3	chr17:19620000-19628000	Enhancers	Fetal Intestine Small	intestine
4	chr17:19623200-19648400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr17:19623400-19628000	Enhancers	Fetal Heart	heart
6	chr17:19624000-19630600	Weak transcription	Small Intestine	intestine
7	chr17:19624200-19627800	Weak transcription	Fetal Lung	lung
8	chr17:19624800-19627800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr17:19624800-19631400	Weak transcription	Brain Germinal Matrix	brain
10	chr17:19625000-19630800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr17:19625200-19631000	Weak transcription	Fetal Kidney	kidney
12	chr17:19625800-19630400	Weak transcription	HepG2	liver
13	chr17:19626400-19628000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr17:19626400-19628800	Enhancers	Fetal Muscle Leg	muscle
15	chr17:19626600-19629000	Enhancers	HMEC	breast
16	chr17:19627000-19629000	Enhancers	A549	lung
17	chr17:19627200-19627800	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr17:19627200-19627800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr17:19627200-19627800	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr17:19627200-19627800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr17:19627200-19627800	Enhancers	Brain Hippocampus Middle	brain
22	chr17:19627200-19628200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr17:19627200-19628200	Flanking Active TSS	NHEK	skin
24	chr17:19627200-19628400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr17:19627200-19628600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr17:19627200-19628600	Enhancers	Fetal Muscle Trunk	muscle
27	chr17:19627200-19628800	Enhancers	Primary hematopoietic stem cells	blood
28	chr17:19627200-19628800	Enhancers	Placenta	Placenta
29	chr17:19627200-19628800	Enhancers	Right Ventricle	heart
30	chr17:19627200-19629200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
31	chr17:19627400-19627800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
32	chr17:19627400-19627800	Enhancers	Brain Cingulate Gyrus	brain
33	chr17:19627400-19627800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
34	chr17:19627400-19627800	Enhancers	Colonic Mucosa	Colon
35	chr17:19627400-19627800	Enhancers	Ovary	ovary
36	chr17:19627400-19627800	Enhancers	Rectal Mucosa Donor 31	rectum
37	chr17:19627400-19627800	Enhancers	Right Atrium	heart
38	chr17:19627400-19627800	Enhancers	HSMMtube	muscle
39	chr17:19627400-19628000	Enhancers	Brain Substantia Nigra	brain
40	chr17:19627400-19628000	Enhancers	Esophagus	oesophagus
41	chr17:19627400-19628000	Enhancers	Left Ventricle	heart
42	chr17:19627400-19628000	Enhancers	Psoas Muscle	Psoas
43	chr17:19627400-19628000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
44	chr17:19627400-19628200	Enhancers	Liver	Liver
45	chr17:19627400-19628200	Flanking Active TSS	Brain Anterior Caudate	brain
46	chr17:19627400-19628400	Enhancers	Brain Inferior Temporal Lobe	brain
47	chr17:19627400-19628600	Enhancers	Gastric	stomach
48	chr17:19627400-19628600	Enhancers	Lung	lung
49	chr17:19627400-19628600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
50	chr17:19627400-19628600	Enhancers	Spleen	Spleen

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