Variant report

Variant	rs9916084
Chromosome Location	chr17:67209463-67209464
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:113089423..113090210-chr17:67209041..67209729,2	MCF-7	breast:

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10775358	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10775359	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1158495	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11652530	0.82[ASN][1000 genomes]
rs11656539	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12453914	0.84[ASN][1000 genomes]
rs12601388	0.83[ASN][1000 genomes]
rs12939282	0.82[ASN][1000 genomes]
rs12940298	0.82[ASN][1000 genomes]
rs12952117	0.82[ASN][1000 genomes]
rs12953127	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1558166	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1968100	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1974576	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1974577	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2041170	0.83[ASN][1000 genomes]
rs2041171	0.83[ASN][1000 genomes]
rs2108738	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2190900	0.83[ASN][1000 genomes]
rs2215148	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2364986	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2364993	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3744489	0.81[ASN][1000 genomes]
rs4334355	0.82[ASN][1000 genomes]
rs4577157	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4603621	0.82[ASN][1000 genomes]
rs4968785	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4968838	0.84[ASN][1000 genomes]
rs4968839	0.82[ASN][1000 genomes]
rs4968843	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4968849	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4968851	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6501183	0.82[ASN][1000 genomes]
rs7208586	0.82[ASN][1000 genomes]
rs7210259	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7213831	0.82[ASN][1000 genomes]
rs7216899	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7217887	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs740518	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs740520	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8064595	0.82[ASN][1000 genomes]
rs8066449	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8074654	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8077551	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8078314	0.82[ASN][1000 genomes]
rs8079981	0.82[ASN][1000 genomes]
rs8080863	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8081003	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9303012	0.81[ASN][1000 genomes]
rs976698	0.81[ASN][1000 genomes]
rs981452	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9891283	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9892172	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9894689	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9898868	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9899837	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9902643	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9902996	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9904672	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9909083	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9911770	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9912127	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9916693	0.84[ASN][1000 genomes]
rs997781	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv470598	chr17:67081830-67212595	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv575930	chr17:67120025-67212031	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv457888	chr17:67149973-67226643	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv575931	chr17:67149973-67226643	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv575932	chr17:67149973-67327806	Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
8	nsv575933	chr17:67153386-67215712	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67144000-67236000	Weak transcription	Psoas Muscle	Psoas
2	chr17:67160600-67220000	Weak transcription	Fetal Lung	lung
3	chr17:67173400-67230000	Weak transcription	Pancreas	Pancrea
4	chr17:67189800-67221400	Weak transcription	Right Ventricle	heart
5	chr17:67192600-67219200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr17:67195000-67209600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr17:67198200-67214800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr17:67201600-67215200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr17:67203400-67215000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr17:67205600-67215000	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr17:67206000-67214800	Weak transcription	Adipose Nuclei	Adipose
12	chr17:67206000-67215200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr17:67207600-67247800	Weak transcription	Left Ventricle	heart
14	chr17:67207800-67215400	Weak transcription	Duodenum Mucosa	Duodenum
15	chr17:67208600-67209800	Strong transcription	Liver	Liver
16	chr17:67208600-67210000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr17:67208800-67209600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr17:67208800-67209800	Strong transcription	Fetal Muscle Trunk	muscle
19	chr17:67209000-67209600	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr17:67209000-67209600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
21	chr17:67209000-67210000	ZNF genes & repeats	Ovary	ovary
22	chr17:67209000-67210400	Strong transcription	Skeletal Muscle Female	skeletal muscle
23	chr17:67209200-67209600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr17:67209200-67209800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr17:67209200-67209800	ZNF genes & repeats	Fetal Muscle Leg	muscle
26	chr17:67209200-67209800	ZNF genes & repeats	Fetal Stomach	stomach
27	chr17:67209200-67209800	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
28	chr17:67209200-67210000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr17:67209200-67210000	ZNF genes & repeats	Fetal Intestine Small	intestine
30	chr17:67209200-67210200	Strong transcription	Skeletal Muscle Male	skeletal muscle
31	chr17:67209200-67210400	ZNF genes & repeats	GM12878-XiMat	blood
32	chr17:67209400-67209800	Active TSS	HUES48 Cell Line	embryonic stem cell
33	chr17:67209400-67209800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
34	chr17:67209400-67209800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr17:67209400-67209800	ZNF genes & repeats	Lung	lung
36	chr17:67209400-67210600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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