Variant report

Variant	rs9918141
Chromosome Location	chr5:16739728-16739729
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:16734341..16736922-chr5:16738909..16741583,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs56058327	1.00[AMR][1000 genomes]
rs57158658	1.00[AMR][1000 genomes]
rs73051099	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869660	chr5:16651289-16766428	Genic enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv880373	chr5:16710572-16785604	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1025225	chr5:16714512-17234866	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv520128	chr5:16737513-16746784	Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16730800-16741400	Strong transcription	A549	lung
2	chr5:16730800-16744400	Weak transcription	HSMM	muscle
3	chr5:16734600-16744400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:16735200-16746600	Weak transcription	HSMMtube	muscle
5	chr5:16736400-16740200	Weak transcription	Right Ventricle	heart
6	chr5:16736400-16781400	Weak transcription	Esophagus	oesophagus
7	chr5:16736600-16740400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr5:16736800-16740200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr5:16736800-16740600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr5:16736800-16741800	Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr5:16736800-16756600	Weak transcription	Ovary	ovary
12	chr5:16736800-16758200	Weak transcription	Spleen	Spleen
13	chr5:16736800-16761200	Weak transcription	Hela-S3	cervix
14	chr5:16736800-16761800	Weak transcription	Colonic Mucosa	Colon
15	chr5:16736800-16762400	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr5:16737000-16741600	Weak transcription	NHDF-Ad	bronchial
17	chr5:16737000-16742000	Active TSS	iPS-20b Cell Line	embryonic stem cell
18	chr5:16737000-16742000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr5:16737000-16780400	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr5:16737800-16740800	Weak transcription	Fetal Kidney	kidney
21	chr5:16738000-16740000	Weak transcription	Fetal Muscle Leg	muscle
22	chr5:16738000-16741600	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr5:16738000-16742400	Active TSS	Fetal Brain Female	brain
24	chr5:16738000-16743800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr5:16738000-16746400	Weak transcription	Osteobl	bone
26	chr5:16738200-16740000	Weak transcription	Brain Cingulate Gyrus	brain
27	chr5:16738200-16740200	Weak transcription	Brain Substantia Nigra	brain
28	chr5:16738200-16740600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr5:16738400-16739800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr5:16738400-16740000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr5:16738400-16740000	Weak transcription	Brain Hippocampus Middle	brain
32	chr5:16738400-16740000	Weak transcription	Fetal Muscle Trunk	muscle
33	chr5:16738400-16740200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr5:16738400-16740200	Weak transcription	Brain Angular Gyrus	brain
35	chr5:16738400-16740200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr5:16738400-16740600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr5:16738400-16740600	Weak transcription	NH-A	brain
38	chr5:16738400-16740800	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr5:16738400-16742000	Weak transcription	Lung	lung
40	chr5:16738400-16748800	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr5:16738600-16739800	Weak transcription	Brain Germinal Matrix	brain
42	chr5:16738600-16740000	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr5:16738600-16740000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr5:16738600-16740200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr5:16738600-16740200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr5:16738600-16740200	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr5:16738600-16740200	Weak transcription	Fetal Lung	lung
48	chr5:16738600-16740200	Weak transcription	Fetal Stomach	stomach
49	chr5:16738600-16740600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr5:16738600-16740600	Weak transcription	Rectal Mucosa Donor 29	rectum

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