Variant report

Variant	rs991866
Chromosome Location	chr3:151425097-151425098
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1851279	0.96[EUR][1000 genomes]
rs976743	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995048	chr3:151114074-151560019	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs991866	GPR87	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:151424400-151425200	Enhancers	Dnd41	blood
2	chr3:151424800-151425200	Enhancers	K562	blood
3	chr3:151424800-151427800	Enhancers	NH-A	brain
4	chr3:151425000-151425200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr3:151425000-151425200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr3:151425000-151425200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:151425000-151425400	Enhancers	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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