Variant report

Variant	rs991873
Chromosome Location	chr2:233711046-233711047
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 136 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:128)

rs_ID	r²[population]
rs1022330	0.88[ASW][hapmap];0.86[CEU][hapmap];0.83[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap];0.83[EUR][1000 genomes]
rs1044480	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10933409	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10933411	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10933412	0.86[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11555646	1.00[ASW][hapmap];0.86[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.94[TSI][hapmap];0.95[YRI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11676216	0.86[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11679079	0.86[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11687128	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11692545	0.81[EUR][1000 genomes]
rs12474040	0.85[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12478564	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12694917	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12987513	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12990821	0.86[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13003675	0.86[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.82[EUR][1000 genomes]
rs13004406	1.00[ASW][hapmap];0.86[CEU][hapmap];0.83[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.94[TSI][hapmap];0.82[YRI][hapmap];0.83[EUR][1000 genomes]
rs13007783	0.80[EUR][1000 genomes]
rs13008942	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13011298	0.85[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[YRI][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13013142	1.00[ASW][hapmap];0.86[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.94[TSI][hapmap];0.95[YRI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13021246	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13029336	0.83[TSI][hapmap]
rs13035829	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13424351	0.80[EUR][1000 genomes]
rs1446308	0.86[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1446310	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1446311	1.00[ASW][hapmap];0.86[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.85[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1801251	1.00[ASW][hapmap];0.86[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.94[TSI][hapmap];0.95[YRI][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1867778	0.86[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1947105	1.00[ASW][hapmap];0.86[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2012221	0.81[CEU][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes]
rs2044449	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2100053	0.86[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2166441	0.82[MKK][hapmap]
rs2197563	0.82[ASW][hapmap];0.87[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap]
rs2250654	0.92[ASN][1000 genomes]
rs2250665	0.92[ASN][1000 genomes]
rs2305137	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2305141	0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs2592102	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2592105	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2592113	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2592115	0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.81[MEX][hapmap];0.96[ASN][1000 genomes]
rs2592116	0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.81[MEX][hapmap];0.96[ASN][1000 genomes]
rs2592117	0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.81[MEX][hapmap];0.96[ASN][1000 genomes]
rs2592126	0.95[CHB][hapmap];0.90[JPT][hapmap];0.82[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2674839	0.86[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2675957	0.91[ASN][1000 genomes]
rs2675966	0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.81[MEX][hapmap];0.96[ASN][1000 genomes]
rs2675967	0.88[ASW][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.92[LWK][hapmap];0.85[MEX][hapmap];0.98[MKK][hapmap];0.90[YRI][hapmap];0.95[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2675971	0.86[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2675973	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2675974	0.82[ASW][hapmap];0.86[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs283466	0.86[ASN][1000 genomes]
rs283468	0.86[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs283469	0.86[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs283471	0.93[ASW][hapmap];0.86[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.92[LWK][hapmap];0.95[MEX][hapmap];0.81[MKK][hapmap];0.94[TSI][hapmap];0.95[YRI][hapmap];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs283474	0.86[ASW][hapmap];0.86[CEU][hapmap];0.94[CHB][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.89[MEX][hapmap];0.94[TSI][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs283475	0.95[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.94[TSI][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs283476	0.86[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs283477	0.81[EUR][1000 genomes]
rs283479	0.83[AMR][1000 genomes]
rs283480	0.83[AMR][1000 genomes]
rs283481	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs283484	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs283485	0.82[AMR][1000 genomes]
rs283486	1.00[ASW][hapmap];0.86[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.94[TSI][hapmap];0.95[YRI][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs33980184	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35085837	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35212961	0.83[EUR][1000 genomes]
rs35362030	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35395584	0.81[EUR][1000 genomes]
rs35621474	0.81[EUR][1000 genomes]
rs36007169	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3816334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3817311	1.00[ASW][hapmap];0.86[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.94[LWK][hapmap];0.94[MEX][hapmap];0.97[MKK][hapmap];0.92[TSI][hapmap];0.95[YRI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4452130	0.82[AMR][1000 genomes]
rs4517962	0.83[EUR][1000 genomes]
rs4973053	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4973054	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4973055	0.81[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4973056	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4973559	0.82[AMR][1000 genomes]
rs4973560	0.84[ASN][1000 genomes]
rs4973561	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs56777991	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6437074	1.00[ASW][hapmap];0.86[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66549961	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs67013068	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6714245	0.86[CEU][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes]
rs6717841	0.94[CHB][hapmap];0.94[JPT][hapmap];0.88[YRI][hapmap];0.81[EUR][1000 genomes]
rs6719061	0.94[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6724117	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6732136	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6733151	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6738386	0.88[ASW][hapmap];0.86[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6739638	0.81[EUR][1000 genomes]
rs6745879	0.86[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.83[EUR][1000 genomes]
rs6746294	0.88[ASW][hapmap];0.86[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.94[TSI][hapmap];0.83[EUR][1000 genomes]
rs6747645	0.86[CEU][hapmap];0.89[GIH][hapmap];0.94[TSI][hapmap];0.81[EUR][1000 genomes]
rs6748027	0.86[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6761324	0.83[EUR][1000 genomes]
rs709933	0.88[ASW][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.94[LWK][hapmap];0.85[MEX][hapmap];0.98[MKK][hapmap];0.90[YRI][hapmap];0.96[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs709934	0.88[ASW][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.94[LWK][hapmap];0.85[MEX][hapmap];1.00[MKK][hapmap];0.90[YRI][hapmap];0.96[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs709938	0.90[ASN][1000 genomes]
rs71421663	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs737028	0.86[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7558609	1.00[ASW][hapmap];0.86[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7562712	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7568385	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7573208	0.88[ASN][1000 genomes]
rs7578299	0.81[EUR][1000 genomes]
rs7587309	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7589201	0.86[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7591176	0.83[EUR][1000 genomes]
rs7592717	0.81[EUR][1000 genomes]
rs7606090	0.88[ASW][hapmap];0.86[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs778166	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs778338	0.94[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs778339	0.93[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs778340	0.82[ASW][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.81[MEX][hapmap];0.86[MKK][hapmap];0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs778368	0.93[ASN][1000 genomes]
rs809639	0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.81[MEX][hapmap];0.96[ASN][1000 genomes]
rs812383	0.95[CHB][hapmap];0.97[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.85[MEX][hapmap];0.92[MKK][hapmap];0.96[ASN][1000 genomes]
rs895430	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9653383	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs983430	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948470	chr2:233166262-233886732	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1005123	chr2:233227729-233920152	Enhancers Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv536173	chr2:233227729-233920152	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv834570	chr2:233639160-233805067	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv460134	chr2:233639909-233714686	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv584696	chr2:233639909-233714686	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv584697	chr2:233684097-233733352	Strong transcription Genic enhancers Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	nsv1009825	chr2:233709566-233763470	Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs991873	C2orf82	cis	parietal	SCAN
rs991873	GIGYF2	cis	parietal	SCAN

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:233665800-233734200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:233667600-233726400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:233689000-233713000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr2:233689200-233726400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr2:233691200-233717200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
6	chr2:233696400-233714200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr2:233698400-233723600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr2:233699200-233712000	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr2:233699200-233717000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr2:233699800-233717000	Strong transcription	Cortex derived primary cultured neurospheres	brain
11	chr2:233700600-233714200	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr2:233701000-233729200	Strong transcription	Fetal Muscle Trunk	muscle
13	chr2:233701800-233717000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr2:233703400-233712000	Weak transcription	Right Ventricle	heart
15	chr2:233703400-233712600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr2:233703400-233716600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr2:233703400-233717000	Strong transcription	Placenta	Placenta
18	chr2:233703400-233718600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
19	chr2:233703400-233726400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr2:233703400-233726600	Strong transcription	HUES64 Cell Line	embryonic stem cell
21	chr2:233703600-233714200	Weak transcription	Stomach Mucosa	stomach
22	chr2:233703600-233717200	Strong transcription	Thymus	Thymus
23	chr2:233703600-233718400	Strong transcription	HUES48 Cell Line	embryonic stem cell
24	chr2:233703600-233725200	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr2:233703800-233716800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr2:233703800-233717000	Strong transcription	HUES6 Cell Line	embryonic stem cell
27	chr2:233703800-233717000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr2:233703800-233717200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr2:233703800-233724800	Strong transcription	Dnd41	blood
30	chr2:233704000-233717000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr2:233704000-233717200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr2:233704000-233721400	Strong transcription	Fetal Intestine Large	intestine
33	chr2:233704200-233716200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr2:233704200-233716800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr2:233704200-233717000	Strong transcription	GM12878-XiMat	blood
36	chr2:233704200-233718200	Strong transcription	Fetal Brain Female	brain
37	chr2:233704200-233719200	Strong transcription	Fetal Muscle Leg	muscle
38	chr2:233704200-233725000	Strong transcription	Fetal Thymus	thymus
39	chr2:233704400-233716800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr2:233704400-233716800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr2:233704400-233717000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr2:233704400-233726200	Strong transcription	Primary T helper cells fromperipheralblood	blood
43	chr2:233704400-233726600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr2:233704600-233716800	Strong transcription	Rectal Smooth Muscle	rectum
45	chr2:233704600-233717000	Strong transcription	Rectal Mucosa Donor 29	rectum
46	chr2:233704600-233717000	Strong transcription	Sigmoid Colon	Sigmoid Colon
47	chr2:233704600-233717200	Strong transcription	Adipose Nuclei	Adipose
48	chr2:233704600-233717600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr2:233704600-233717600	Strong transcription	Duodenum Mucosa	Duodenum
50	chr2:233704600-233718200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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