Variant report

Variant	rs9920033
Chromosome Location	chr15:49936667-49936668
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:49934440..49937340-chr15:49937772..49940035,3	MCF-7	breast:
2	chr15:49936169..49939153-chr15:49946646..49948297,2	K562	blood:
3	chr15:49934468..49937629-chr15:49939008..49941773,3	K562	blood:
4	chr15:49932896..49934447-chr15:49935029..49936774,2	MCF-7	breast:
5	chr15:49935570..49938221-chr15:49938905..49941859,4	K562	blood:
6	chr15:49928084..49930382-chr15:49935420..49939202,4	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10519233	1.00[YRI][hapmap]
rs13329455	1.00[YRI][hapmap]
rs1588127	1.00[YRI][hapmap]
rs17402569	1.00[YRI][hapmap]
rs17480434	1.00[YRI][hapmap]
rs17481696	1.00[YRI][hapmap]
rs3210227	1.00[YRI][hapmap]
rs8040716	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431388	chr15:49835663-49997483	Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49913600-49937400	Weak transcription	Spleen	Spleen
2	chr15:49914400-49938000	Weak transcription	Brain Substantia Nigra	brain
3	chr15:49914800-49937800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr15:49915400-49937800	Weak transcription	Brain Anterior Caudate	brain
5	chr15:49918000-49938600	Weak transcription	Right Ventricle	heart
6	chr15:49918000-49938800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr15:49918200-49937200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr15:49918200-49938000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr15:49918200-49938400	Weak transcription	HepG2	liver
10	chr15:49918200-49942200	Weak transcription	GM12878-XiMat	blood
11	chr15:49918400-49938000	Weak transcription	Colonic Mucosa	Colon
12	chr15:49918600-49938800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr15:49919800-49940200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr15:49920000-49938200	Weak transcription	Brain Angular Gyrus	brain
15	chr15:49920000-49940400	Weak transcription	A549	lung
16	chr15:49920800-49937800	Weak transcription	NHEK	skin
17	chr15:49920800-49938000	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr15:49920800-49940000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr15:49921000-49937600	Weak transcription	HMEC	breast
20	chr15:49926000-49938000	Weak transcription	NH-A	brain
21	chr15:49927000-49940000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr15:49927600-49938800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr15:49927800-49936800	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr15:49927800-49938600	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr15:49928000-49940200	Weak transcription	Fetal Intestine Small	intestine
26	chr15:49928200-49936800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr15:49928200-49937800	Weak transcription	Fetal Stomach	stomach
28	chr15:49928200-49938200	Weak transcription	Gastric	stomach
29	chr15:49928200-49939600	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr15:49928200-49940400	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr15:49928200-49940600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr15:49928200-49943000	Weak transcription	Lung	lung
33	chr15:49928400-49937400	Weak transcription	Fetal Kidney	kidney
34	chr15:49928400-49939800	Weak transcription	HUVEC	blood vessel
35	chr15:49929000-49938800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr15:49929400-49938000	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr15:49929800-49938200	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr15:49929800-49938200	Weak transcription	Fetal Brain Female	brain
39	chr15:49930000-49938600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr15:49930200-49937800	Weak transcription	Ovary	ovary
41	chr15:49930200-49938400	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr15:49930400-49939200	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr15:49932400-49939200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr15:49932600-49937400	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr15:49933800-49938000	Strong transcription	HSMM	muscle
46	chr15:49934400-49936800	Strong transcription	Fetal Thymus	thymus
47	chr15:49934400-49937000	Strong transcription	Primary hematopoietic stem cells	blood
48	chr15:49934800-49937600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr15:49935600-49936800	Strong transcription	Placenta	Placenta
50	chr15:49935600-49938800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links